[Home] | [Total List]

[174202_at]

Description C35999_rc /REP_DB=TREMBL Accession /GB=C35999 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk452g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 11      4grp_highest_8_8 > 39      4grp_high_8_8 > 03      6grp_highest_nonorm > 13      6grp_total > 23      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5674
1 2 3 4 range
A 3801.6
(-0.5)
P 		1913.6
(-2.5)
P 		1501.2
(-3)
P 		6950.1
(3)
P 		5449
B 3809.7
(0.1)
P 		2388.5
(-1.6)
P 		1276.3
(-3)
P 		6166.9
(3)
P 		4891
C 3779.3
(-0.2)
P 		1811.2
(-2.6)
P 		1438.5
(-3)
P 		6487.6
(3)
P 		5049
avr 3796.9
(-0.2) 		2037.8
(-2.3) 		1405.3
(-3) 		6534.9
(3) 		5130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2010
1 2 3 4 5 6 range
A 3810
(3)
P 		2742.9
(-0.3)
P 		3056.2
(0.7)
P 		2444.6
(-1.2)
P 		2030.4
(-2.5)
P 		1873.8
(-3)
P 		1936
B 3127.3
(3)
P 		3067.1
(2.5)
P 		3122.9
(3)
P 		2871.4
(1.1)
P 		2327.3
(-3)
P 		2456.7
(-2)
P 		800
C 2283.8
(-0.8)
P 		3096.2
(3)
P 		2448.9
(0)
P 		2933.8
(2.2)
P 		1800
(-3)
P 		2152.1
(-1.4)
P 		1296
avr 3073.7
(3) 		2968.7
(2.4) 		2876
(1.8) 		2749.9
(1.1) 		2052.6
(-3) 		2160.9
(-2.4) 		1021
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1088
1 2 3 4 range
A 1384.1
(3)
P 		415.4
(-2.9)
P 		392.4
(-3)
P 		1017.4
(0.8)
P 		992
B 1214.9
(2.4)
P 		589.9
(-1.3)
P 		295.7
(-3)
P 		1314.2
(3)
P 		1019
C 1251.1
(3)
P 		520.7
(-2.8)
P 		501.4
(-3)
P 		1093.9
(1.7)
P 		750
avr 1283.4
(3) 		508.7
(-2.2) 		396.5
(-3) 		1141.8
(2) 		887

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 632
1 2 3 4 5 6 range
A 702.3
(-0.2)
P 		975.5
(3)
P 		665.6
(-0.6)
P 		620
(-1.1)
P 		612.7
(-1.2)
P 		456.2
(-3)
P 		519
B 1088.2
(3)
P 		1020.9
(1.8)
P 		758.3
(-3)
P 		760.5
(-3)
P 		945.6
(0.4)
P 		916.1
(-0.1)
P 		330
C 846.5
(1.4)
P 		944.7
(3)
P 		623.3
(-2.3)
P 		590
(-2.9)
P 		582.4
(-3)
P 		720.4
(-0.7)
P 		362
avr 879
(1.1) 		980.4
(3) 		682.4
(-2.5) 		656.8
(-3) 		713.6
(-1.9) 		697.6
(-2.2) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22252
Sequence Type Exemplar sequence
Representative Public ID C35999 NCBI
Target Description C35999_rc /REP_DB=TREMBL Accession /GB=C35999 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk452g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077375 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-19) (flp-19) mRNA, complete cds. 11/11 None
M79.4 ENSEMBL cdna:known chromosome:CEL140:X:10604736:10605950:1 gene:M79.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10605396-10605676(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-19
Ensembl M79.4
Entrez Gene 181260 Entrez gene
SwissProt Q9XVX1 EMBL-EBI
WormBase CE18890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90690 Hypothetical protein M79.4 [Caenorhabditis elegans] ref|NP_509776.1| FMRF-Like Peptide family member (flp-19) [Caenorhabditis elegans] 3.0E-44
blast CAE60808 Hypothetical protein CBG04506 [Caenorhabditis briggsae] 7.0E-38
Sequence
Target Sequence 
>C. ELEGANS:174202_AT
gtcaggttcggataaccggctttgcacaattttgacggtcagacatggttcaatacacct
caaacaaattgcgcacatcaaatcagacttcagacgacaatcagcacaccttccttcttt
ctgtccatcctgtccttttatatacgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGGTTCGGATAACCGGCTTTGC 689 297 98 Antisense
GGATAACCGGCTTTGCACAATTTTG 16 511 107 Antisense
GGCTTTGCACAATTTTGACGGTCAG 289 537 115 Antisense
GACGGTCAGACATGGTTCAATACAC 217 377 131 Antisense
CAGACATGGTTCAATACACCTCAAA 325 205 137 Antisense
ACACCTCAAACAAATTGCGCACATC 516 109 152 Antisense
GCGCACATCAAATCAGACTTCAGAC 251 287 168 Antisense
GACTTCAGACGACAATCAGCACACC 344 371 183 Antisense
TTCAGACGACAATCAGCACACCTTC 218 687 186 Antisense
TCCATCCTGTCCTTTTATATACGTT 226 589 221 Antisense
CATCCTGTCCTTTTATATACGTTTT 461 211 223 Antisense
Sequence Source Affymetrix Proprietary Database