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[174201_s_at]

Description C59299_rc /REP_DB=TREMBL Accession /GB=C59299 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk411a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 95      6grp_total > 75      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1102
1 2 3 4 range
A 316.5
(-2.3)
P 		209.3
(-3)
P 		565.3
(-0.7)
P 		1155.1
(3)
P 		946
B 242.4
(-3)
P 		314.3
(-2.5)
P 		395
(-1.9)
P 		1086.4
(3)
P 		844
C 142.6
(-3)
P 		318.1
(-2)
P 		432.5
(-1.4)
P 		1244.1
(3)
P 		1102
avr 233.8
(-3) 		280.6
(-2.7) 		464.3
(-1.5) 		1161.9
(3) 		928

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 896
1 2 3 4 5 6 range
A 390.9
(-2.1)
P 		277.1
(-3)
P 		443.9
(-1.7)
P 		845
(1.4)
P 		729.6
(0.5)
P 		1054.3
(3)
P 		777
B 448
(-3)
P 		464.2
(-2.8)
P 		550.8
(-2)
P 		949.5
(1.8)
P 		566.9
(-1.9)
P 		1076.7
(3)
P 		629
C 216.1
(-3)
P 		484.3
(-1.2)
P 		555.2
(-0.7)
P 		679.6
(0.1)
P 		540.5
(-0.8)
P 		1111.8
(3)
P 		896
avr 351.7
(-3) 		408.5
(-2.5) 		516.6
(-1.6) 		824.7
(0.9) 		612.3
(-0.9) 		1080.9
(3) 		729
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 115.3
(0.4)
P 		45.4
(-3)
P 		147.8
(2)
P 		169.1
(3)
P 		124
B 77.3
(-3)
P 		77.6
(-3)
P 		91.5
(-2.4)
P 		231.5
(3)
P 		154
C 47.2
(-3)
P 		91.5
(-1.4)
P 		150.7
(0.8)
P 		209.8
(3)
P 		163
avr 79.9
(-2.6) 		71.5
(-3) 		130
(-0.3) 		203.5
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 72.1
(-3)
P 		98.5
(-2.1)
P 		96.7
(-2.2)
P 		214.3
(1.6)
P 		220.2
(1.8)
P 		256.7
(3)
P 		185
B 155.9
(-2.5)
P 		154.5
(-2.5)
P 		133.8
(-3)
P 		251.5
(-0.4)
P 		230.3
(-0.8)
P 		401.5
(3)
P 		268
C 80.1
(-3)
P 		147.8
(-1.6)
P 		141.3
(-1.7)
P 		136.7
(-1.8)
P 		174.9
(-1.1)
P 		372.2
(3)
P 		292
avr 102.7
(-3) 		133.6
(-2.2) 		123.9
(-2.5) 		200.8
(-0.6) 		208.5
(-0.4) 		343.5
(3) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174201_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20140
Sequence Type Exemplar sequence
Representative Public ID C59299 NCBI
Target Description C59299_rc /REP_DB=TREMBL Accession /GB=C59299 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk411a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058981 NCBI Caenorhabditis elegans Y119C1B.5 (Y119C1B.5) mRNA, complete cds. 11/11 None
GENEFINDER00000012134 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4509051:4518466:-1 11/11 None
SNAP00000012123 ENSEMBL cdna:SNAP chromosome:CEL140:I:4511610:4516057:-1 11/11 None
Y119C1B.5 ENSEMBL cdna:known chromosome:CEL140:I:4511446:4516057:-1 gene:Y119C1B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4511521-4512147(-) 84.81 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119C1B.5
Entrez Gene 172053 Entrez gene
SwissProt Q95Y82 EMBL-EBI
WormBase CE27234 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596417_AT similar to CG2304-PA, isoform A cfa
CANINE_2:CFAAFFX.26463.1.S1_AT similar to CG2304-PA, isoform A cfa
CHICKEN:GGAAFFX.25941.1.S1_AT similar to hypothetical protein FLJ31951 gga
HU35KSUBD:RC_AA621100_AT hypothetical protein FLJ31951 hs
U133_X3P:HS.104893.0.A1_3P_AT hypothetical protein FLJ31951 hs
HG-U133_PLUS_2:226077_AT hypothetical protein FLJ31951 hs
HG-U133B:226077_AT hypothetical protein FLJ31951 hs
HG-U95B:56817_AT hypothetical protein FLJ31951 hs
HG-U95D:67967_AT hypothetical protein FLJ31951 hs
HG-U95D:70664_AT hypothetical protein FLJ31951 hs
HG-U133_PLUS_2:236322_AT Hypothetical protein FLJ31951 hs
HG-U133B:236322_AT Hypothetical protein FLJ31951 hs
HG-U95E:85440_AT Hypothetical protein FLJ31951 hs
U133_X3P:HS.187810.0.A1_3P_AT Hypothetical protein FLJ31951 hs
U133_X3P:HS.187810.0.A1_3P_S_AT Hypothetical protein FLJ31951 hs
U133_X3P:HS.256050.0.A1_3P_AT Hypothetical protein FLJ31951 hs
MG-U74AV2:96104_AT RIKEN cDNA 3732413I11 gene mm
MU11KSUBA:AA289339_S_AT RIKEN cDNA 3732413I11 gene mm
MOE430A:1452769_AT RIKEN cDNA 3732413I11 gene mm
MOUSE430A_2:1452769_AT RIKEN cDNA 3732413I11 gene mm
MOUSE430_2:1452769_AT RIKEN cDNA 3732413I11 gene mm
MOUSE430_2:1443435_AT RIKEN cDNA 3732413I11 gene (3732413I11Rik), mRNA mm
MOE430B:1443435_AT RIKEN cDNA 3732413I11 gene (3732413I11Rik), mRNA mm
MU19KSUBA:TC23357_AT RIKEN cDNA 3732413I11 gene (3732413I11Rik), mRNA mm
RAE230B:1383951_AT similar to hypothetical protein FLJ31951 (predicted) rn
RAT230_2:1383951_AT similar to hypothetical protein FLJ31951 (predicted) rn
RAE230B:1384725_AT Similar to hypothetical protein FLJ31951 (predicted) rn
RAT230_2:1384725_AT Similar to hypothetical protein FLJ31951 (predicted) rn
RG-U34C:RC_AI236056_AT Similar to hypothetical protein FLJ31951 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK39324 Hypothetical protein Y119C1B.5 [Caenorhabditis elegans] ref|NP_491382.1| Y119C1B.5 [Caenorhabditis elegans] 0.0
blast CAE68902 Hypothetical protein CBG14874 [Caenorhabditis briggsae] 0.0
blast AAK39323 Hypothetical protein Y119C1B.4 [Caenorhabditis elegans] ref|NP_491381.1| Y119C1B.4 [Caenorhabditis elegans] sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial precursor 1.0E-165
blast XP_694343 PREDICTED: similar to RING zinc finger containing protein (1F80) [Danio rerio] 9.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.0E-15
Pfam IPR001857 EMBL-EBI Ribosomal protein L19 7.7E-25
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.0E-15
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.0E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491382.1 10 107-129,136-158,181-203,240-259,295-317,330-352,406-428,449-471,475-496,544-566
Y119C1B.5 10 107-129,136-158,181-203,240-259,295-317,330-352,406-428,449-471,475-496,544-566
GENEFINDER00000012134 12 4-21,247-266,270-289,310-332,347-364,371-390,426-448,461-483,537-559,580-602,606-627,675-697
SNAP00000012123 10 107-129,136-158,229-251,284-306,321-343,364-386,401-423,435-452,467-489,532-554
Sequence
Target Sequence 
>C. ELEGANS:174201_S_AT
gggatgatctattcggtttccgtgcggaacgtgaaactcgaaatcgaaatgagcaaagga
ttcatggggcaagagatatgtggcctcttctcgttgataatgacgcctacgagagtgatt
cggatgctggttcggagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATGATCTATTCGGTTTCCGTGC 422 495 38 Antisense
GATCTATTCGGTTTCCGTGCGGAAC 616 417 43 Antisense
TATTCGGTTTCCGTGCGGAACGTGA 239 663 47 Antisense
TTTCCGTGCGGAACGTGAAACTCGA 559 667 54 Antisense
GCGGAACGTGAAACTCGAAATCGAA 162 293 61 Antisense
GAGCAAAGGATTCATGGGGCAAGAG 335 387 88 Antisense
GGGGCAAGAGATATGTGGCCTCTTC 705 497 103 Antisense
AGAGATATGTGGCCTCTTCTCGTTG 244 69 109 Antisense
TGACGCCTACGAGAGTGATTCGGAT 564 569 138 Antisense
GAGAGTGATTCGGATGCTGGTTCGG 574 395 148 Antisense
AGTGATTCGGATGCTGGTTCGGAGG 340 53 151 Antisense
Sequence Source Affymetrix Proprietary Database