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[174200_at]

Description C52132_rc /REP_DB=TREMBL Accession /GB=C52132 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk238f1 : 3prime end, single read.
Cluster 6grp_total > 30      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12
(1.5)
A 		3.6
(-2.3)
A 		2.1
(-3)
A 		15.2
(3)
A 		13
B 5.3
(0.5)
A 		6.9
(3)
A 		3.1
(-3)
A 		6.1
(1.7)
A 		4
C 1.7
(-3)
A 		5.2
(-1.4)
A 		1.9
(-2.9)
A 		14.8
(3)
A 		13
avr 6.3
(-0.6) 		5.2
(-1.3) 		2.4
(-3) 		12
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 3.7
(-2.8)
A 		5
(-2.6)
A 		53.9
(3)
P 		23.8
(-0.5)
A 		1.8
(-3)
A 		1.9
(-3)
A 		52
B 8.9
(-1.3)
A 		3.9
(-3)
A 		21.5
(3)
A 		13
(0.1)
A 		7.7
(-1.7)
A 		8.3
(-1.5)
A 		18
C 4
(-2.6)
A 		40.4
(3)
A 		3.1
(-2.7)
A 		1.9
(-2.9)
A 		1.1
(-3)
A 		1.2
(-3)
A 		39
avr 5.5
(-2.5) 		16.4
(0.4) 		26.2
(3) 		12.9
(-0.5) 		3.5
(-3) 		3.8
(-2.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.4
(3)
A 		0.8
(-2.5)
A 		0.5
(-3)
A 		2.2
(-0.4)
A 		4
B 1.7
(3)
A 		1.7
(3)
A 		0.7
(-3)
A 		1.3
(0.6)
A 		1
C 0.6
(-3)
A 		1.5
(-0.2)
A 		0.7
(-2.7)
A 		2.5
(3)
A 		2
avr 2.2
(3) 		1.3
(-0.4) 		0.6
(-3) 		2
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		1.8
(-2.3)
A 		11.7
(3)
P 		6
(-0.1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		11
B 3.1
(-0.2)
A 		1.3
(-3)
A 		5.2
(3)
A 		3.5
(0.4)
A 		3.1
(-0.2)
A 		3.1
(-0.2)
A 		4
C 1.5
(-2.4)
A 		12.3
(3)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		12
avr 1.8
(-2.3) 		5.1
(2) 		5.9
(3) 		3.3
(-0.4) 		1.3
(-3) 		1.3
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21776
Sequence Type Exemplar sequence
Representative Public ID C52132 NCBI
Target Description C52132_rc /REP_DB=TREMBL Accession /GB=C52132 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk238f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C52132
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52132 C52132_rc /REP_DB=TREMBL Accession /GB=C52132 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk238f1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028685 10/11 Negative Strand Matching Probes None
NM_072126 10/11 Negative Strand Matching Probes A 
SNAP00000007008 10/11 Negative Strand Matching Probes None
GENEFINDER00000007014 10/11 Negative Strand Matching Probes None
F26F12.3c.2 10/11 Negative Strand Matching Probes None
F26F12.3a.2 10/11 Negative Strand Matching Probes A 
F26F12.3b 10/11 Negative Strand Matching Probes A 
F26F12.3a.1 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5846552-5846816(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174200_AT
cctcccaacgtttgttcttattcattgagtacaggacgttcgaggcgatgccatcgtggc
tttccgaagcgacgcgctccttgcgcttctttccgagcacgtggttcggatcgtcgatgg
tcttgacgaggaatgcgccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCCCAACGTTTGTTCTTATTCAT 432 267 45 Antisense
ACGTTTGTTCTTATTCATTGAGTAC 298 95 52 Antisense
CATTGAGTACAGGACGTTCGAGGCG 110 215 67 Antisense
GAGTACAGGACGTTCGAGGCGATGC 98 399 71 Antisense
CAGGACGTTCGAGGCGATGCCATCG 190 209 76 Antisense
TCGAGGCGATGCCATCGTGGCTTTC 299 601 84 Antisense
CTTCTTTCCGAGCACGTGGTTCGGA 427 217 130 Antisense
CCGAGCACGTGGTTCGGATCGTCGA 710 263 137 Antisense
CACGTGGTTCGGATCGTCGATGGTC 395 197 142 Antisense
GGTTCGGATCGTCGATGGTCTTGAC 477 507 147 Antisense
TGGTCTTGACGAGGAATGCGCCACG 164 553 162 Antisense
Sequence Source Affymetrix Proprietary Database