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[174199_at]

Description C59453_rc /REP_DB=TREMBL Accession /GB=C59453 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk431d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 640
1 2 3 4 range
A 1076.2
(3)
P 		436.2
(-3)
P 		539.1
(-2)
P 		635.4
(-1.1)
P 		640
B 1060.1
(3)
P 		596.4
(-2.2)
P 		522.8
(-3)
P 		663.7
(-1.4)
P 		537
C 948.4
(3)
P 		591
(-2.4)
P 		554.2
(-3)
P 		629.8
(-1.8)
P 		394
avr 1028.2
(3) 		541.2
(-3) 		538.7
(-3) 		643
(-1.7) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 784.7
(0.5)
P 		837.7
(1)
P 		442.1
(-3)
P 		539.9
(-2)
P 		649.1
(-0.9)
P 		1031.1
(3)
P 		589
B 738.1
(2.3)
P 		656.9
(1)
P 		433.7
(-2.8)
P 		574.3
(-0.4)
P 		419.5
(-3)
P 		779.1
(3)
P 		360
C 866.4
(3)
P 		640.1
(-0.7)
P 		685.5
(0)
P 		502.3
(-3)
P 		531.7
(-2.5)
P 		864
(3)
P 		364
avr 796.4
(1.5) 		711.6
(0.1) 		520.4
(-3) 		538.8
(-2.7) 		533.4
(-2.8) 		891.4
(3) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 391.8
(3)
P 		94.7
(-3)
P 		140.9
(-2)
P 		93
(-3)
P 		299
B 338.1
(3)
P 		147.3
(-2.3)
P 		121.1
(-3)
P 		141.4
(-2.4)
P 		217
C 313.9
(3)
P 		169.9
(-1.2)
P 		193.2
(-0.5)
P 		106.2
(-3)
P 		208
avr 347.9
(3) 		137.3
(-2.4) 		151.7
(-2) 		113.5
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 144.6
(-1.6)
P 		297.9
(3)
P 		96.3
(-3)
P 		136.9
(-1.8)
P 		195.9
(-0)
P 		251
(1.6)
P 		202
B 256.8
(1.9)
P 		218.7
(0.7)
P 		105.3
(-3)
P 		152.1
(-1.5)
P 		170.4
(-0.9)
P 		290.5
(3)
P 		185
C 321.1
(3)
P 		195.3
(-0.4)
P 		174.5
(-1)
P 		101
(-3)
P 		172.1
(-1.1)
P 		289.2
(2.1)
P 		220
avr 240.8
(1.6) 		237.3
(1.4) 		125.4
(-3) 		130
(-2.8) 		179.5
(-0.9) 		276.9
(3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20300
Sequence Type Exemplar sequence
Representative Public ID C59453 NCBI
Target Description C59453_rc /REP_DB=TREMBL Accession /GB=C59453 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk431d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061224 NCBI Caenorhabditis elegans F31C3.3 (F31C3.3) mRNA, complete cds. 11/11 None
F31C3.3 ENSEMBL cdna:known chromosome:CEL140:I:15049565:15058278:-1 gene:F31C3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15049555-15049836(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31C3.3
Entrez Gene 173375 Entrez gene
SwissProt O62191 EMBL-EBI
WormBase CE32399 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597259_AT similar to CG14967-PA cfa
CANINE:1592164_AT similar to CG14967-PA cfa
CANINE_2:CFAAFFX.28633.1.S1_AT similar to CG14967-PA cfa
DROSOPHILA_2:1641403_AT dm
DROSGENOME1:152138_AT dm
CHICKEN:GGA.14208.1.S1_S_AT similar to KIAA0100 protein gga
CHICKEN:GGAAFFX.25972.1.S1_AT similar to KIAA0100 protein gga
HG-U133A:201729_S_AT KIAA0100 gene product hs
HG-U133_PLUS_2:201729_S_AT KIAA0100 gene product hs
HG-U133A_2:201729_S_AT KIAA0100 gene product hs
HU35KSUBD:RC_R61557_AT KIAA0100 gene product hs
HUGENEFL:D43947_AT KIAA0100 gene product hs
U133_X3P:G7661903_3P_A_AT KIAA0100 gene product hs
U133_X3P:HS.151761.0.S1_3P_A_AT KIAA0100 gene product hs
HG-U133A_2:201728_S_AT KIAA0100 gene product hs
HG-U133_PLUS_2:201728_S_AT KIAA0100 gene product hs
HG-U133A:201728_S_AT KIAA0100 gene product hs
HG-U95AV2:39783_AT KIAA0100 gene product hs
HG-U95B:45521_S_AT KIAA0100 gene product hs
HG-U133_PLUS_2:231542_AT KIAA0100 gene product hs
HG-U133B:231542_AT KIAA0100 gene product hs
HG-U133_PLUS_2:231541_S_AT KIAA0100 gene product hs
HG-U133B:231541_S_AT KIAA0100 gene product hs
U133_X3P:HS.166433.0.S1_3P_AT KIAA0100 gene product hs
HG-U95E:84274_AT KIAA0100 gene product hs
HG-U95C:66204_AT KIAA0100 gene product hs
MOUSE430A_2:1455905_AT RIKEN cDNA 2610507B11 gene mm
MOE430A:1455905_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430_2:1455905_AT RIKEN cDNA 2610507B11 gene mm
MU11KSUBB:MSA.2263.0_AT RIKEN cDNA 2610507B11 gene mm
MU11KSUBB:MSA.2263.0_G_AT RIKEN cDNA 2610507B11 gene mm
MG-U74AV2:98538_AT RIKEN cDNA 2610507B11 gene mm
MOE430A:1426820_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430A_2:1426820_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430_2:1426820_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430_2:1447506_AT E1 protein mm
MOE430B:1447506_AT E1 protein mm
MU19KSUBB:TC30563_AT E1 protein mm
MU19KSUBB:TC34192_S_AT E1 protein mm
MU19KSUBB:TC34316_AT E1 protein mm
MU19KSUBB:TC34316_G_AT E1 protein mm
RG-U34B:RC_AI060132_AT similar to CG14967-PA (predicted) rn
RG-U34B:RC_AI010658_AT similar to CG14967-PA (predicted) rn
RAE230A:1398971_AT similar to CG14967-PA (predicted) rn
RAT230_2:1398971_AT similar to CG14967-PA (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07193 Hypothetical protein F31C3.3 [Caenorhabditis elegans] ref|NP_493625.2| F31C3.3 [Caenorhabditis elegans] 0.0
blast CAE72553 Hypothetical protein CBG19737 [Caenorhabditis briggsae] 0.0
blast EAA11765 ENSANGP00000007087 [Anopheles gambiae str. PEST] ref|XP_315477.2| ENSANGP00000007087 [Anopheles gambiae str. PEST] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174199_AT
attactgcgctgttgtttgtgtgcatttggtaccacactaccaccaccccaccataccgc
ctgtcctatacatttaccaaatggtcactggtcaccttttactcggtttccccttctttc
tctcgtcaccctccactcactcacttgcagtttgccctctctatcgctctatccacgttg
caccgtgtggtttatgtgtgctgacgtgttctttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACTGCGCTGTTGTTTGTGTGCA 302 13 13 Antisense
GCGCTGTTGTTTGTGTGCATTTGGT 509 287 19 Antisense
GTGCATTTGGTACCACACTACCACC 636 477 33 Antisense
CGCCTGTCCTATACATTTACCAAAT 465 257 70 Antisense
TTTACCAAATGGTCACTGGTCACCT 429 673 85 Antisense
AAATGGTCACTGGTCACCTTTTACT 256 121 91 Antisense
CTCTATCCACGTTGCACCGTGTGGT 15 231 179 Antisense
TATCCACGTTGCACCGTGTGGTTTA 404 657 182 Antisense
ACGTTGCACCGTGTGGTTTATGTGT 213 93 187 Antisense
GTGGTTTATGTGTGCTGACGTGTTC 422 489 199 Antisense
TATGTGTGCTGACGTGTTCTTTTTC 323 655 205 Antisense
Sequence Source Affymetrix Proprietary Database