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[174197_s_at]

Description C59455_rc /REP_DB=TREMBL Accession /GB=C59455 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk431e1 : 3prime end, single read.
Cluster 6grp_total > 67      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 50
(-3)
A 		82.8
(0)
A 		57.3
(-2.3)
M 		115.2
(3)
P 		65
B 53.8
(-2.5)
A 		51.1
(-3)
A 		55.8
(-2.2)
A 		86.1
(3)
P 		35
C 36.2
(-3)
A 		68.1
(0.5)
P 		44.4
(-2.1)
A 		91.1
(3)
P 		55
avr 46.7
(-3) 		67.3
(-0.6) 		52.5
(-2.3) 		97.5
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 67.9
(1.6)
A 		39.4
(-2.5)
P 		35.8
(-3)
P 		44.7
(-1.7)
A 		61.5
(0.7)
P 		77.4
(3)
P 		42
B 46.9
(0.2)
A 		21.5
(-3)
A 		48.7
(0.4)
P 		30.2
(-1.9)
A 		48.5
(0.4)
P 		69.5
(3)
P 		48
C 31.2
(-3)
A 		79.8
(3)
P 		66.7
(1.4)
P 		37.5
(-2.2)
A 		38.7
(-2.1)
P 		65.1
(1.2)
P 		49
avr 48.7
(-1) 		46.9
(-1.3) 		50.4
(-0.7) 		37.5
(-3) 		49.6
(-0.8) 		70.7
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 18.2
(3)
A 		18
(2.6)
A 		15
(-3)
M 		16.9
(0.6)
P 		3
B 17.1
(1.7)
A 		12.6
(-3)
A 		12.9
(-2.7)
A 		18.3
(3)
P 		6
C 12
(-3)
A 		19.6
(3)
P 		15.5
(-0.2)
A 		15.4
(-0.3)
P 		8
avr 15.8
(0.3) 		16.7
(2.5) 		14.5
(-3) 		16.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 12.5
(-0.4)
A 		14
(0.4)
P 		7.8
(-3)
P 		11.3
(-1.1)
A 		18.6
(2.9)
P 		18.8
(3)
P 		11
B 16.3
(-0.1)
A 		7.2
(-3)
A 		11.8
(-1.5)
P 		8
(-2.7)
A 		19.7
(1)
P 		25.9
(3)
P 		19
C 11.6
(-1.5)
A 		24.4
(3)
P 		17
(0.4)
P 		7.5
(-3)
A 		12.5
(-1.2)
P 		21.8
(2.1)
P 		17
avr 13.5
(-0.9) 		15.2
(-0.2) 		12.2
(-1.5) 		8.9
(-3) 		16.9
(0.6) 		22.2
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174197_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22285
Sequence Type Exemplar sequence
Representative Public ID C59455 NCBI
Target Description C59455_rc /REP_DB=TREMBL Accession /GB=C59455 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk431e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078000 NCBI Caenorhabditis elegans F23D12.2 (F23D12.2) mRNA, complete cds. 11/11 A 
SNAP00000042566 ENSEMBL cdna:SNAP chromosome:CEL140:X:14416283:14421472:-1 11/11 None
GENEFINDER00000042581 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14416283:14421719:-1 11/11 None
F23D12.2 ENSEMBL cdna:known chromosome:CEL140:X:14411337:14421391:-1 gene:F23D12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14416207-14416538(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23D12.2
Entrez Gene 181542 Entrez gene
SwissProt Q19761 EMBL-EBI
WormBase CE05700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94618 Hypothetical protein F23D12.2 [Caenorhabditis elegans] emb|CAA94917.1| Hypothetical protein F23D12.2 [Caenorhabditis elegans] ref|NP_510401.1| F23D12.2 [Caenorhabditis elegans] 0.0
blast CAB03979 Hypothetical protein C49F5.6 [Caenorhabditis elegans] ref|NP_510007.1| C49F5.6 [Caenorhabditis elegans] 9.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.0E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042581 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:174197_S_AT
gtttgggcgatacgtgccgctgaaacagtcttctcataactcaacgagcggagtagtaga
atgttcaaatgagaaaagcgatattgcgccggtggatgcctgtaccagttcaaatccgga
aactgaaaaaccatcggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGGCGATACGTGCCGCTGAAA 627 451 13 Antisense
GATACGTGCCGCTGAAACAGTCTTC 134 425 21 Antisense
GTGCCGCTGAAACAGTCTTCTCATA 102 479 26 Antisense
GAAACAGTCTTCTCATAACTCAACG 208 357 34 Antisense
GTCTTCTCATAACTCAACGAGCGGA 111 469 40 Antisense
ACGAGCGGAGTAGTAGAATGTTCAA 443 93 56 Antisense
GAGAAAAGCGATATTGCGCCGGTGG 276 393 83 Antisense
AGCGATATTGCGCCGGTGGATGCCT 123 83 89 Antisense
GGTGGATGCCTGTACCAGTTCAAAT 463 499 103 Antisense
GCCTGTACCAGTTCAAATCCGGAAA 286 283 110 Antisense
CCGGAAACTGAAAAACCATCGGATG 548 1 128 Antisense
Sequence Source Affymetrix Proprietary Database