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[174196_s_at]

Description C53670_rc /REP_DB=TREMBL Accession /GB=C53670 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk322h8 : 3prime end, single read.
Cluster 4grp_high_8_8 > 27      6grp_total > 05      4grp_total > 37      6grp_cgc > 13      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 96.2
(3)
P 		91.9
(2.5)
P 		42.7
(-3)
P 		93
(2.6)
P 		54
B 97.5
(3)
P 		68.8
(-3)
M 		81.3
(-0.4)
P 		81
(-0.4)
P 		29
C 89
(1.1)
P 		99.2
(3)
P 		72.1
(-2.1)
P 		67.5
(-3)
M 		32
avr 94.2
(3) 		86.6
(1.4) 		65.4
(-3) 		80.5
(0.1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 92
(3)
P 		42.7
(-1.8)
P 		30
(-3)
A 		34.5
(-2.6)
A 		43.6
(-1.7)
P 		46.6
(-1.4)
A 		62
B 44.9
(-0.5)
P 		62
(3)
A 		36.3
(-2.2)
M 		32.6
(-3)
A 		46.4
(-0.2)
A 		35.6
(-2.4)
A 		29
C 49.5
(0.8)
A 		62.2
(3)
A 		52
(1.2)
A 		56.3
(2)
A 		40.4
(-0.8)
A 		27.4
(-3)
A 		35
avr 62.1
(3) 		55.6
(1.5) 		39.4
(-2.3) 		41.1
(-1.9) 		43.5
(-1.4) 		36.5
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 35
(3)
P 		20
(-0.8)
P 		11.2
(-3)
P 		13.6
(-2.4)
P 		24
B 31.1
(3)
P 		17
(-3)
M 		18.8
(-2.2)
P 		17.3
(-2.9)
P 		14
C 29.5
(3)
P 		28.5
(2.7)
P 		25.1
(1.5)
P 		11.4
(-3)
M 		18
avr 31.9
(3) 		21.8
(-0.4) 		18.4
(-1.6) 		14.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 17
(3)
P 		15.2
(2)
P 		6.5
(-3)
A 		8.8
(-1.7)
A 		13.1
(0.8)
P 		11.4
(-0.2)
A 		11
B 15.6
(0.5)
P 		20.6
(3)
A 		8.8
(-2.9)
M 		8.6
(-3)
A 		18.9
(2.2)
A 		13.3
(-0.7)
A 		12
C 18.3
(2.6)
A 		19
(3)
A 		13.2
(-0.6)
A 		11.3
(-1.7)
A 		13.1
(-0.6)
A 		9.2
(-3)
A 		10
avr 17
(2.1) 		18.3
(3) 		9.5
(-3) 		9.6
(-2.9) 		15
(0.8) 		11.3
(-1.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174196_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22124
Sequence Type Exemplar sequence
Representative Public ID C53670 NCBI
Target Description C53670_rc /REP_DB=TREMBL Accession /GB=C53670 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk322h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077234(11), NM_001029411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077234 NCBI Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-4) (him-4) mRNA, complete cds. 11/11 A 
NM_001029411 NCBI Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-4) (him-4) mRNA, complete cds. 11/11 None
GENEFINDER00000012501 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9717557:9733132:1 11/11 None
SNAP00000012494 ENSEMBL cdna:SNAP chromosome:CEL140:X:9719466:9726054:1 11/11 None
F15G9.4a ENSEMBL cdna:known chromosome:CEL140:X:9717557:9753684:1 gene:F15G9.4 11/11 A 
F15G9.4b ENSEMBL cdna:known chromosome:CEL140:X:9717557:9753500:1 gene:F15G9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9724539-9724818(+) 100.0 100.0
Public Domain and Genome References
Ensembl F15G9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87344 Hypothetical protein F15G9.4a [Caenorhabditis elegans] emb|CAA87335.1| Hypothetical protein F15G9.4a [Caenorhabditis elegans] ref|NP_509635.2| High Incidence of Males (increased X chromosome loss) family member (him-4) [Caenorhabditis elegans] 0.0
blast CAA87345 Hypothetical protein F15G9.4b [Caenorhabditis elegans] emb|CAA87336.1| Hypothetical protein F15G9.4b [Caenorhabditis elegans] ref|NP_001024582.1| High Incidence of Males (increased X chromosome loss) family member (him-4) [Caenorhabditis elegans] gb|AAC26792.1| hemicentin precursor [Caenorhabditis elegans] 0.0
blast CAE69764 Hypothetical protein CBG16045 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.3E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.5E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.7E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.0E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0050
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.4E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.9E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.9E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.7E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.2E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.51
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.64
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.3E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.5E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.7E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.0E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0050
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-10
Sequence
Target Sequence 
>C. ELEGANS:174196_S_AT
gttatgttgtcgagtctgacggcactcttgtgattcaaagtgcatcagtggaagacgcta
ctatttacacctgcaaggcttcaaatcctgcgggcaaagctgaagcaaaccttcaagtca
cagttatcgcttctccggatattaaggaccctgatgttgtcacacaagaatctattaagg
agtctcatccattctcactttattgtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATGTTGTCGAGTCTGACGGCAC 471 447 43 Antisense
GTCTGACGGCACTCTTGTGATTCAA 549 469 56 Antisense
AAAGTGCATCAGTGGAAGACGCTAC 587 119 79 Antisense
GAAGACGCTACTATTTACACCTGCA 29 339 93 Antisense
ACCTGCAAGGCTTCAAATCCTGCGG 178 89 111 Antisense
AATCCTGCGGGCAAAGCTGAAGCAA 84 167 126 Antisense
ACAGTTATCGCTTCTCCGGATATTA 563 107 162 Antisense
GCTTCTCCGGATATTAAGGACCCTG 310 301 171 Antisense
AGGACCCTGATGTTGTCACACAAGA 532 55 187 Antisense
TTAAGGAGTCTCATCCATTCTCACT 557 683 217 Antisense
CATCCATTCTCACTTTATTGTCCAG 488 211 228 Antisense
Sequence Source Affymetrix Proprietary Database