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[174195_at]

Description C37971_rc /REP_DB=TREMBL Accession /GB=C37971 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk484a5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 56      4grp_high_8_8 > 34      6grp_highest_nonorm > 10      6grp_total > 26      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 910
1 2 3 4 range
A 1616.1
(3)
P 		1450.7
(1.5)
P 		961.5
(-3)
P 		1036
(-2.3)
P 		655
B 1605.8
(3)
P 		1352.8
(0.8)
P 		923.4
(-3)
P 		1073.8
(-1.7)
P 		682
C 1833.3
(3)
P 		1412.3
(-0.1)
P 		1024.7
(-3)
P 		1211.1
(-1.6)
P 		809
avr 1685.1
(3) 		1405.3
(0.7) 		969.9
(-3) 		1107
(-1.8) 		715

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 874
1 2 3 4 5 6 range
A 1647.9
(3)
P 		1482.4
(1.7)
P 		1208.2
(-0.4)
P 		973.2
(-2.2)
P 		866.7
(-3)
P 		1111.1
(-1.1)
P 		781
B 1741
(3)
P 		1608.2
(2.1)
P 		1082
(-1.5)
P 		992.8
(-2.1)
P 		868.7
(-3)
P 		1151.1
(-1.1)
P 		872
C 1581
(3)
P 		1520.5
(2.4)
P 		1048.6
(-2)
P 		979.2
(-2.6)
P 		935.7
(-3)
P 		1285.1
(0.2)
P 		645
avr 1656.6
(3) 		1537
(2.1) 		1112.9
(-1.3) 		981.7
(-2.3) 		890.4
(-3) 		1182.4
(-0.7) 		766
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 588.4
(3)
P 		314.9
(-0.8)
P 		251.4
(-1.6)
P 		151.6
(-3)
P 		437
B 512.1
(3)
P 		334.1
(-0.6)
P 		214
(-3)
P 		228.8
(-2.7)
P 		298
C 606.9
(3)
P 		406.1
(0)
P 		357.1
(-0.7)
P 		204.2
(-3)
P 		403
avr 569.1
(3) 		351.7
(-0.5) 		274.2
(-1.7) 		194.9
(-3) 		374

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 303.8
(-1.8)
P 		527.2
(3)
P 		263.1
(-2.7)
P 		246.8
(-3)
P 		261.5
(-2.7)
P 		270.5
(-2.5)
P 		280
B 605.8
(3)
P 		535.3
(1.8)
P 		262.7
(-3)
P 		262.9
(-3)
P 		352.9
(-1.4)
P 		429.3
(-0.1)
P 		343
C 586
(3)
P 		464
(1.1)
P 		266.9
(-1.9)
P 		196.9
(-3)
P 		302.8
(-1.4)
P 		430.2
(0.6)
P 		389
avr 498.5
(2.8) 		508.8
(3) 		264.2
(-2.4) 		235.5
(-3) 		305.7
(-1.5) 		376.7
(0.1) 		273
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21357
Sequence Type Exemplar sequence
Representative Public ID C37971 NCBI
Target Description C37971_rc /REP_DB=TREMBL Accession /GB=C37971 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk484a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069614 NCBI Caenorhabditis elegans F13E9.11 (F13E9.11) mRNA, complete cds. 11/11 None
F13E9.11 ENSEMBL cdna:known chromosome:CEL140:IV:10865239:10869140:-1 gene:F13E9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10865308-10865601(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E9.11
Entrez Gene 177980 Entrez gene
SwissProt Q95NK9 EMBL-EBI
WormBase CE35471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42286 Hypothetical protein F13E9.11 [Caenorhabditis elegans] emb|CAC42340.2| Hypothetical protein F13E9.11 [Caenorhabditis elegans] ref|NP_502015.2| F13E9.11 [Caenorhabditis elegans] 0.0
blast CAE70833 Hypothetical protein CBG17613 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502015.2 8 73-95,110-132,153-175,190-212,225-244,259-281,298-320,335-352
F13E9.11 8 73-95,110-132,153-175,190-212,225-244,259-281,298-320,335-352
Sequence
Target Sequence 
>C. ELEGANS:174195_AT
ccatcactgtttgcggtcaagaatattgctatgatctacatcgctcttcgtgaactttgg
acacgtcttcaatactggagaatgaaacgacgtgcagctttgagtagaaatgagctttca
gcagctattcacaatcatgaagaagaagagcatgaataataataataatagttgcctgtc
taattgaaaatgagccactttgctcattttcaatatcctatcccaatgctttcataaagt
ttacctcagtcagttagatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCACTGTTTGCGGTCAAGAATA 321 271 13 Antisense
ATTGCTATGATCTACATCGCTCTTC 707 5 37 Antisense
ATCTACATCGCTCTTCGTGAACTTT 394 29 46 Antisense
TCGTGAACTTTGGACACGTCTTCAA 212 605 60 Antisense
GGACACGTCTTCAATACTGGAGAAT 527 525 71 Antisense
GAAACGACGTGCAGCTTTGAGTAGA 100 357 96 Antisense
CTTTCAGCAGCTATTCACAATCATG 259 223 127 Antisense
ATAATAGTTGCCTGTCTAATTGAAA 648 23 177 Antisense
TGCTCATTTTCAATATCCTATCCCA 397 581 213 Antisense
CAATATCCTATCCCAATGCTTTCAT 415 181 223 Antisense
AAGTTTACCTCAGTCAGTTAGATGT 103 157 249 Antisense
Sequence Source Affymetrix Proprietary Database