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[174194_at]

Description C53440_rc /REP_DB=TREMBL Accession /GB=C53440 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk315g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 219.1
(3)
P 		169.2
(-1.5)
P 		191.6
(0.5)
P 		152.5
(-3)
P 		67
B 204.6
(3)
P 		176.7
(1)
P 		121
(-3)
P 		193.5
(2.2)
P 		84
C 239.6
(3)
P 		174.2
(-1.1)
P 		144.2
(-3)
P 		180.4
(-0.7)
P 		95
avr 221.1
(3) 		173.4
(-1.2) 		152.3
(-3) 		175.5
(-1) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 151.7
(-1)
P 		172
(0.1)
P 		160
(-0.5)
P 		114.6
(-3)
P 		225
(3)
P 		124.6
(-2.5)
P 		110
B 278.1
(3)
P 		254.1
(1.8)
P 		172
(-2.2)
P 		167
(-2.5)
P 		214.7
(-0.1)
P 		156
(-3)
P 		122
C 273.4
(3)
P 		225.3
(0.6)
P 		197
(-0.9)
P 		165.6
(-2.5)
P 		196.3
(-0.9)
P 		155.6
(-3)
P 		118
avr 234.4
(3) 		217.1
(1.8) 		176.3
(-0.9) 		149.1
(-2.8) 		212
(1.5) 		145.4
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 79.8
(3)
P 		36.7
(-1.5)
P 		50.1
(-0.1)
P 		22.3
(-3)
P 		58
B 65.2
(3)
P 		43.6
(-0.5)
P 		28
(-3)
P 		41.2
(-0.9)
P 		37
C 79.3
(3)
P 		50.1
(-0.6)
P 		50.2
(-0.6)
P 		30.4
(-3)
P 		49
avr 74.8
(3) 		43.5
(-1.3) 		42.8
(-1.4) 		31.3
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 28
(-3)
P 		61.2
(2)
P 		34.8
(-2)
P 		29.1
(-2.8)
P 		67.9
(3)
P 		30.3
(-2.7)
P 		40
B 96.7
(3)
P 		84.6
(1.7)
P 		41.8
(-3)
P 		44.2
(-2.7)
P 		87.2
(2)
P 		58.2
(-1.2)
P 		55
C 101.3
(3)
P 		68.7
(0.1)
P 		50.1
(-1.5)
P 		33.3
(-3)
P 		63.5
(-0.3)
P 		52.1
(-1.3)
P 		68
avr 75.3
(3) 		71.5
(2.4) 		42.2
(-2) 		35.5
(-3) 		72.9
(2.6) 		46.9
(-1.3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174194_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22232
Sequence Type Exemplar sequence
Representative Public ID C53440 NCBI
Target Description C53440_rc /REP_DB=TREMBL Accession /GB=C53440 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk315g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077532 NCBI Caenorhabditis elegans C35C5.6 (C35C5.6) mRNA, complete cds. 11/11 None
C35C5.6 ENSEMBL cdna:known chromosome:CEL140:X:11563909:11569611:1 gene:C35C5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11569323-11569601(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35C5.6
Entrez Gene 181345 Entrez gene
SwissProt Q93330 EMBL-EBI
WormBase CE03069 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629579_AT dm
DROSGENOME1:152774_AT dm
CHICKEN:GGAAFFX.10344.1.S1_AT similar to T1 protein gga
CHICKEN:GGAAFFX.10344.2.S1_AT similar to T1 protein gga
CHICKEN:GGAAFFX.10344.2.S1_S_AT similar to T1 protein gga
CHICKEN:GGAAFFX.10344.3.S1_AT similar to T1 protein gga
Protein Similarities
Method ID Description E-Value
blast CAB01686 Hypothetical protein C35C5.6 [Caenorhabditis elegans] ref|NP_509933.1| C35C5.6 [Caenorhabditis elegans] 0.0
blast CAE70614 Hypothetical protein CBG17297 [Caenorhabditis briggsae] 0.0
blast CAE70616 Hypothetical protein CBG17299 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174194_AT
ttagttttttgttgcataagtgccatttttcacagacataatctgagtttcagtcatggg
tgaatgttttgcaatcgcattttatcgcttaattgtacacgggttttagagatcagaaaa
atcaagagtaattgttgaaattttccatttagcattttaatcgtacccatcgcatttttt
attttccacctcataattctagtcgatccgacaatagtgtgtcagttttttcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGTTTTTTGTTGCATAAGTGCCA 32 683 13 Antisense
CATGGGTGAATGTTTTGCAATCGCA 470 209 67 Antisense
AATCGCATTTTATCGCTTAATTGTA 360 167 85 Antisense
TATCGCTTAATTGTACACGGGTTTT 6 659 95 Antisense
TGTACACGGGTTTTAGAGATCAGAA 649 557 106 Antisense
TTAGCATTTTAATCGTACCCATCGC 133 681 161 Antisense
TAATCGTACCCATCGCATTTTTTAT 65 619 170 Antisense
CCATCGCATTTTTTATTTTCCACCT 691 269 179 Antisense
TTTTCCACCTCATAATTCTAGTCGA 329 675 194 Antisense
ACCTCATAATTCTAGTCGATCCGAC 675 87 200 Antisense
CAATAGTGTGTCAGTTTTTTCAAGT 40 181 224 Antisense
Sequence Source Affymetrix Proprietary Database