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[174193_at]

Description C32184_rc /REP_DB=TREMBL Accession /GB=C32184 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 16      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 75      6grp_total > 07      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 830
1 2 3 4 range
A 1210.4
(3)
P 		576.6
(-3)
P 		663.4
(-2.2)
P 		953.2
(0.6)
P 		634
B 1406.7
(3)
P 		684.5
(-2.2)
P 		576.8
(-3)
P 		900.6
(-0.7)
P 		830
C 1240
(3)
P 		708.3
(-2.9)
P 		696.1
(-3)
P 		808.4
(-1.8)
P 		544
avr 1285.7
(3) 		656.5
(-2.9) 		645.4
(-3) 		887.4
(-0.7) 		640

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 849
1 2 3 4 5 6 range
A 1347.4
(3)
P 		894
(-1.1)
P 		693.7
(-2.8)
P 		754.1
(-2.3)
P 		752.5
(-2.3)
P 		676.6
(-3)
P 		671
B 940.7
(2.3)
P 		860.1
(0.9)
P 		733.1
(-1.3)
P 		982.7
(3)
P 		635.1
(-3)
P 		764.2
(-0.8)
P 		348
C 938.4
(2.2)
P 		1005.5
(3)
P 		802.7
(0.6)
P 		789.2
(0.4)
P 		498.5
(-3)
P 		902.4
(1.8)
P 		507
avr 1075.5
(3) 		919.9
(0.9) 		743.2
(-1.5) 		842
(-0.1) 		628.7
(-3) 		781.1
(-1) 		447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 440.7
(3)
P 		125.2
(-3)
P 		173.4
(-2.1)
P 		139.5
(-2.7)
P 		316
B 448.6
(3)
P 		169.1
(-2.3)
P 		133.7
(-3)
P 		191.9
(-1.9)
P 		315
C 410.5
(3)
P 		203.6
(-1.5)
P 		242.6
(-0.7)
P 		136.3
(-3)
P 		274
avr 433.3
(3) 		166
(-2.8) 		183.2
(-2.4) 		155.9
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 248.4
(0.5)
P 		317.9
(3)
P 		151.1
(-3)
P 		191.3
(-1.6)
P 		227.1
(-0.3)
P 		164.7
(-2.5)
P 		167
B 327.3
(3)
P 		286.3
(1.4)
P 		178
(-3)
P 		260.3
(0.3)
P 		258.1
(0.2)
P 		285
(1.3)
P 		149
C 347.8
(3)
P 		306.8
(1.7)
P 		204.3
(-1.6)
P 		158.7
(-3)
P 		161.3
(-2.9)
P 		302.1
(1.5)
P 		189
avr 307.8
(3) 		303.7
(2.8) 		177.8
(-3) 		203.4
(-1.8) 		215.5
(-1.3) 		250.6
(0.4) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22233
Sequence Type Exemplar sequence
Representative Public ID C32184 NCBI
Target Description C32184_rc /REP_DB=TREMBL Accession /GB=C32184 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029503(11), NM_001029505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029503 NCBI Caenorhabditis elegans F46H5.2a (F46H5.2) mRNA, complete cds. 11/11 None
NM_001029505 NCBI Caenorhabditis elegans F46H5.2c (F46H5.2) mRNA, complete cds. 11/11 None
F46H5.2c ENSEMBL cdna:known chromosome:CEL140:X:7265600:7267828:1 gene:F46H5.2 11/11 A 
F46H5.2a ENSEMBL cdna:known chromosome:CEL140:X:7265611:7267831:1 gene:F46H5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180989 3 2 NM_001029503 174193_at (11), 180632_at (11), 180675_at (10)
NM_001029504 180632_at (11)
NM_001029505 174193_at (11), 180675_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7267470-7267765(+) 100.0 100.0
Public Domain and Genome References
Ensembl F46H5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37021 Hypothetical protein F46H5.2a [Caenorhabditis elegans] ref|NP_001024674.1| F46H5.2a [Caenorhabditis elegans] 0.0
blast AAP40530 Hypothetical protein F46H5.2b [Caenorhabditis elegans] ref|NP_001024675.1| F46H5.2b [Caenorhabditis elegans] 0.0
blast AAP40531 Hypothetical protein F46H5.2c [Caenorhabditis elegans] ref|NP_001024676.1| F46H5.2c [Caenorhabditis elegans] 1.0E-171
blast AAB37021 Hypothetical protein F46H5.2a [Caenorhabditis elegans] ref|NP_001024674.1| F46H5.2a [Caenorhabditis elegans] 1.0E-171
Sequence
Target Sequence 
>C. ELEGANS:174193_AT
ttccatttccaccacacttgatgatctccttttatcaagcccctacacaaatcagctttt
tcttctgatacacgcgtctctttaacactgatttaagtgagtctcaaacatagagtgaat
cttttgctagaaaacagggactccattttcagtcatttcatatgtatgctgatgtctctc
ctgtctcccgttcgttgtcaatttttttcaaacttttttttgccctgttaattttcacat
tcggttactagaactact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCATTTCCACCACACTTGATGAT 330 701 20 Antisense
TGATGATCTCCTTTTATCAAGCCCC 367 567 38 Antisense
CTTTTATCAAGCCCCTACACAAATC 369 221 48 Antisense
GCCCCTACACAAATCAGCTTTTTCT 613 279 58 Antisense
AGCTTTTTCTTCTGATACACGCGTC 336 79 73 Antisense
TACACGCGTCTCTTTAACACTGATT 610 643 88 Antisense
TTTGCTAGAAAACAGGGACTCCATT 442 257 142 Antisense
GGGACTCCATTTTCAGTCATTTCAT 361 495 156 Antisense
ATATGTATGCTGATGTCTCTCCTGT 503 21 179 Antisense
TTTGCCCTGTTAATTTTCACATTCG 616 667 238 Antisense
TTCACATTCGGTTACTAGAACTACT 331 687 253 Antisense
Sequence Source Affymetrix Proprietary Database