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[174191_at]

Description C57206_rc /REP_DB=TREMBL Accession /GB=C57206 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 21      6grp_total > 05      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1510
1 2 3 4 range
A 2438.1
(3)
P 		934.1
(-3)
P 		1399.8
(-1.1)
P 		1001.4
(-2.7)
P 		1504
B 2444
(3)
P 		1260
(-1.9)
P 		1219.1
(-2.1)
P 		991.6
(-3)
P 		1452
C 2376.7
(3)
P 		1158.4
(-2.3)
P 		1456
(-1)
P 		985.6
(-3)
P 		1391
avr 2419.6
(3) 		1117.5
(-2.5) 		1358.3
(-1.5) 		992.9
(-3) 		1427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1214
1 2 3 4 5 6 range
A 1863.6
(3)
P 		1557.4
(1.4)
P 		1162.3
(-0.7)
P 		1103.9
(-1)
P 		1184.5
(-0.6)
P 		733.2
(-3)
P 		1130
B 1660.6
(3)
P 		1376.3
(1.2)
P 		795.7
(-2.5)
P 		1197.7
(0)
P 		991
(-1.3)
P 		720
(-3)
P 		941
C 1635.7
(3)
P 		1331.9
(1.2)
P 		1479.9
(2.1)
P 		796
(-2.1)
P 		967.9
(-1.1)
P 		649.8
(-3)
P 		986
avr 1720
(3) 		1421.9
(1.2) 		1146
(-0.4) 		1032.5
(-1) 		1047.8
(-1) 		701
(-3) 		1019
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 741
1 2 3 4 range
A 887.7
(3)
P 		202.8
(-2.5)
P 		365.9
(-1.2)
P 		146.6
(-3)
P 		741
B 779.4
(3)
P 		311.2
(-1.9)
P 		282.5
(-2.2)
P 		211.3
(-3)
P 		568
C 786.8
(3)
P 		333.1
(-1.4)
P 		507.5
(0.3)
P 		166.2
(-3)
P 		621
avr 818
(3) 		282.4
(-2) 		385.3
(-1) 		174.7
(-3) 		643

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 343.5
(-0.4)
P 		553.9
(3)
P 		253.1
(-1.8)
P 		280
(-1.4)
P 		357.4
(-0.1)
P 		178.5
(-3)
P 		375
B 577.8
(3)
P 		458.1
(1.1)
P 		193.2
(-3)
P 		317.2
(-1.1)
P 		402.6
(0.3)
P 		268.5
(-1.8)
P 		385
C 606.3
(3)
P 		406.4
(0.3)
P 		376.7
(-0.1)
P 		160.1
(-3)
P 		313.2
(-0.9)
P 		217.5
(-2.2)
P 		446
avr 509.2
(3) 		472.8
(2.2) 		274.3
(-1.9) 		252.4
(-2.4) 		357.7
(-0.2) 		221.5
(-3) 		288
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22137
Sequence Type Exemplar sequence
Representative Public ID C57206 NCBI
Target Description C57206_rc /REP_DB=TREMBL Accession /GB=C57206 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171755(11), NM_171969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171755 NCBI Caenorhabditis elegans F49E2.2a (F49E2.2) mRNA, complete cds. 11/11 None
NM_171969 NCBI Caenorhabditis elegans F49E2.2b (F49E2.2) mRNA, complete cds. 11/11 None
F49E2.2a.2 ENSEMBL cdna:known chromosome:CEL140:X:9567253:9573655:1 gene:F49E2.2 11/11 A 
F49E2.2a.3 ENSEMBL cdna:known chromosome:CEL140:X:9569305:9573631:1 gene:F49E2.2 11/11 None
F49E2.2a.1 ENSEMBL cdna:known chromosome:CEL140:X:9569311:9573655:1 gene:F49E2.2 11/11 A 
F49E2.2b ENSEMBL cdna:known chromosome:CEL140:X:9569340:9573583:1 gene:F49E2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9573256-9573587(+) 100.0 100.0
Public Domain and Genome References
Ensembl F49E2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86421 Hypothetical protein F49E2.2a [Caenorhabditis elegans] ref|NP_741876.1| F49E2.2a [Caenorhabditis elegans] 0.0
blast CAD45594 Hypothetical protein F49E2.2b [Caenorhabditis elegans] ref|NP_741877.1| F49E2.2b [Caenorhabditis elegans] 0.0
blast CAE69792 Hypothetical protein CBG16083 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 1.3E-6
Pfam IPR001452 EMBL-EBI SH3 1.3E-6
Sequence
Target Sequence 
>C. ELEGANS:174191_AT
gtcaacccataaactttcaattacaaaaaaacaacattcttgtcatttctcgttttgtct
gtgacttatcttcccatattttcaccagaacgcctatttttgcaaataactattttgtga
tttcctgtaattccttgatttatttccccagtttttaaataattcattcttatcccagtg
gtccagttttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACCCATAAACTTTCAATTACA 359 463 122 Antisense
ACAACATTCTTGTCATTTCTCGTTT 25 113 152 Antisense
TCTTGTCATTTCTCGTTTTGTCTGT 244 619 159 Antisense
GTTTTGTCTGTGACTTATCTTCCCA 118 449 173 Antisense
TATCTTCCCATATTTTCACCAGAAC 348 659 188 Antisense
TTCACCAGAACGCCTATTTTTGCAA 389 683 202 Antisense
ATAACTATTTTGTGATTTCCTGTAA 75 25 227 Antisense
GTGATTTCCTGTAATTCCTTGATTT 135 485 238 Antisense
TAATTCCTTGATTTATTTCCCCAGT 432 633 249 Antisense
ATAATTCATTCTTATCCCAGTGGTC 159 27 280 Antisense
TCTTATCCCAGTGGTCCAGTTTTTA 195 615 289 Antisense
Sequence Source Affymetrix Proprietary Database