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[174190_at]

Description C59845_rc /REP_DB=TREMBL Accession /GB=C59845 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk443f7 : 3prime end, single read.
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 2.7
(-3)
A 		4.9
(1)
A 		3.2
(-2.1)
A 		6
(3)
A 		3
B 7.1
(2.9)
A 		4.9
(0.1)
A 		2.4
(-3)
A 		7.2
(3)
A 		5
C 2.5
(-3)
A 		5.1
(-2.8)
A 		3.2
(-3)
A 		97.7
(3)
A 		95
avr 4.1
(-2.8) 		5
(-2.6) 		2.9
(-3) 		37
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.7
(0.4)
A 		3.4
(-0.2)
A 		2.1
(-2.8)
A 		2
(-3)
A 		4.4
(1.8)
A 		5
(3)
A 		3
B 3
(-0.4)
A 		5
(3)
A 		2.7
(-0.9)
A 		1.5
(-3)
A 		3.9
(1.1)
A 		1.5
(-3)
A 		4
C 2.7
(-2.6)
A 		5.5
(3)
A 		3
(-2)
A 		2.8
(-2.4)
A 		2.7
(-2.6)
A 		2.5
(-3)
A 		3
avr 3.1
(-0.6) 		4.6
(3) 		2.6
(-1.8) 		2.1
(-3) 		3.7
(0.8) 		3
(-0.8) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1
(1)
A 		1.1
(3)
A 		0.8
(-3)
A 		0.9
(-1)
A 		0
B 2.3
(3)
A 		1.2
(-0.9)
A 		0.6
(-3)
A 		1.5
(0.2)
A 		2
C 0.8
(-3)
A 		1.5
(-2.7)
A 		1.1
(-2.9)
A 		16.5
(3)
A 		16
avr 1.4
(-2.3) 		1.3
(-2.5) 		0.8
(-3) 		6.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-1)
A 		1.2
(2.3)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		1.3
(3)
A 		1.2
(2.3)
A 		1
B 1.1
(0.2)
A 		1.7
(3)
A 		0.7
(-1.6)
A 		0.4
(-3)
A 		1.6
(2.5)
A 		0.5
(-2.5)
A 		1
C 1
(-0.8)
A 		1.7
(3)
A 		0.8
(-1.9)
A 		0.6
(-3)
A 		0.9
(-1.4)
A 		0.8
(-1.9)
A 		1
avr 0.9
(-0.6) 		1.5
(3) 		0.6
(-2.4) 		0.5
(-3) 		1.3
(1.8) 		0.8
(-1.2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20599
Sequence Type Exemplar sequence
Representative Public ID C59845 NCBI
Target Description C59845_rc /REP_DB=TREMBL Accession /GB=C59845 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk443f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59845
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59845 C59845_rc /REP_DB=TREMBL Accession /GB=C59845 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk443f7 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13183947-13184227(-) 36.07 100.0
Sequence
Target Sequence 
>C. ELEGANS:174190_AT
tttcgctagctatattgggtttatttctggccagattagtaggttttggctagattgggt
gtgcgtctggctagatttggtgtgcgtctggctagattaggtgtgcgtctggctagatta
ggtgtgcgtctggctagattaggtgtgcggctggctagattaggtgtgcgtctggctaga
ttaggggtgcgtctggctagattgggtgtgcgtctcgctagattaggtgtgtatttggcc
agattggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGCTAGCTATATTGGGTTTATT 142 669 13 Antisense
TATTGGGTTTATTTCTGGCCAGATT 127 665 25 Antisense
TTTCTGGCCAGATTAGTAGGTTTTG 118 669 36 Antisense
TTGGCTAGATTGGGTGTGCGTCTGG 217 709 58 Antisense
TAGATTTGGTGTGCGTCTGGCTAGA 63 639 84 Antisense
TGGTGTGCGTCTGGCTAGATTAGGT 235 551 90 Antisense
GTGTGCGGCTGGCTAGATTAGGTGT 541 487 155 Antisense
GCTGGCTAGATTAGGTGTGCGTCTG 75 295 162 Antisense
GATTAGGGGTGCGTCTGGCTAGATT 161 429 191 Antisense
TGCGTCTCGCTAGATTAGGTGTGTA 603 581 221 Antisense
AGGTGTGTATTTGGCCAGATTGGGA 203 57 237 Antisense
Sequence Source Affymetrix Proprietary Database