[Home] | [Total List]

[174188_at]

Description C38651_rc /REP_DB=TREMBL Accession /GB=C38651 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496c9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 18      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_total > 16      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 810.3
(3)
P 		335.9
(-2.5)
P 		350.5
(-2.4)
P 		294.7
(-3)
P 		516
B 918.6
(3)
P 		481
(-2)
P 		391.5
(-3)
P 		566.8
(-1)
P 		527
C 721.6
(3)
P 		554
(-0.1)
P 		562.5
(0)
P 		402.3
(-3)
P 		319
avr 816.8
(3) 		457
(-2.5) 		434.8
(-2.8) 		421.3
(-3) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 921
1 2 3 4 5 6 range
A 784
(3)
P 		731.2
(2.5)
P 		128.6
(-3)
P 		201.9
(-2.3)
P 		277.3
(-1.6)
P 		409.8
(-0.4)
P 		655
B 496.2
(2.3)
P 		550.7
(3)
P 		111.7
(-3)
P 		442.8
(1.5)
P 		367.5
(0.5)
P 		236.2
(-1.3)
P 		439
C 1033.1
(3)
P 		356.5
(-2)
P 		382.9
(-1.8)
P 		308
(-2.3)
M 		397.9
(-1.7)
P 		216
(-3)
P 		817
avr 771.1
(3) 		546.1
(0.6) 		207.7
(-3) 		317.6
(-1.8) 		347.6
(-1.5) 		287.3
(-2.2) 		563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 295
(3)
P 		72.9
(-2.3)
P 		91.6
(-1.8)
P 		43.1
(-3)
P 		252
B 292.9
(3)
P 		118.8
(-2.2)
P 		90.7
(-3)
P 		120.8
(-2.1)
P 		202
C 238.9
(3)
P 		159.3
(0.2)
P 		196.1
(1.5)
P 		67.8
(-3)
P 		171
avr 275.6
(3) 		117
(-1.8) 		126.1
(-1.5) 		77.2
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 144.5
(0)
P 		260.1
(3)
P 		28
(-3)
P 		51.2
(-2.4)
P 		83.7
(-1.6)
P 		99.8
(-1.1)
P 		232
B 172.7
(2.6)
P 		183.3
(3)
P 		27.1
(-3)
P 		117.3
(0.5)
P 		149.3
(1.7)
P 		88.1
(-0.7)
P 		156
C 382.9
(3)
P 		108.8
(-2.1)
P 		97.5
(-2.3)
P 		61.9
(-3)
M 		128.8
(-1.7)
P 		72.3
(-2.8)
P 		321
avr 233.4
(3) 		184.1
(1.4) 		50.9
(-3) 		76.8
(-2.1) 		120.6
(-0.7) 		86.7
(-1.8) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20426
Sequence Type Exemplar sequence
Representative Public ID C38651 NCBI
Target Description C38651_rc /REP_DB=TREMBL Accession /GB=C38651 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T19B4.2 ENSEMBL cdna:known chromosome:CEL140:I:5691841:5697505:1 gene:T19B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5696788-5697068(+) 100.0 100.0
Public Domain and Genome References
Ensembl T19B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37636 Nuclear pore complex protein protein 7 [Caenorhabditis elegans] ref|NP_491665.1| Nuclear Pore complex Protein family member (npp-7) [Caenorhabditis elegans] 0.0
blast CAE68938 Hypothetical protein CBG14918 [Caenorhabditis briggsae] 0.0
blast AAO52512 similar to Streptococcus pneumoniae. Cell wall surface anchor family protein [Dictyostelium discoideum] 5.0E-18
Sequence
Target Sequence 
>C. ELEGANS:174188_AT
tgcccttaattaattgtatgtttgttgtgaagtagagaagaggaactgtacaaaacatat
ccgttttcccattttaaatttcgcctcatgtttatcaaaatttattttcttttcctcgaa
acgttttttggagtgtccccttctctccacaacagtcctctacataaaaccctagttatc
tttctatcctcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCTTAATTAATTGTATGTTTGT 252 585 13 Antisense
GTATGTTTGTTGTGAAGTAGAGAAG 679 455 28 Antisense
AGGAACTGTACAAAACATATCCGTT 372 55 53 Antisense
TACAAAACATATCCGTTTTCCCATT 254 641 61 Antisense
TTTCCCATTTTAAATTTCGCCTCAT 498 633 77 Antisense
AAATTTCGCCTCATGTTTATCAAAA 45 117 88 Antisense
TTCGCCTCATGTTTATCAAAATTTA 319 697 92 Antisense
CTCCACAACAGTCCTCTACATAAAA 231 237 157 Antisense
CAGTCCTCTACATAAAACCCTAGTT 354 205 165 Antisense
AACCCTAGTTATCTTTCTATCCTCA 154 145 180 Antisense
CCTAGTTATCTTTCTATCCTCATTC 378 267 183 Antisense
Sequence Source Affymetrix Proprietary Database