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[174186_s_at]

Description C57167_rc /REP_DB=TREMBL Accession /GB=C57167 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk280g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 651
1 2 3 4 range
A 233
(-1.7)
P 		93.9
(-3)
P 		166.5
(-2.3)
P 		745
(3)
P 		651
B 192.1
(-2.3)
P 		146.2
(-3)
P 		147.6
(-3)
P 		521.9
(3)
P 		376
C 171.9
(-2.2)
P 		117.4
(-3)
P 		164.9
(-2.3)
P 		520
(3)
P 		403
avr 199
(-2) 		119.2
(-3) 		159.7
(-2.5) 		595.6
(3) 		476

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 902
1 2 3 4 5 6 range
A 162.8
(-2.8)
P 		143
(-3)
P 		231.8
(-2.2)
P 		300.7
(-1.6)
P 		636.5
(1.3)
P 		835.9
(3)
P 		693
B 198.3
(-3)
P 		205.8
(-2.9)
P 		237.4
(-2.7)
P 		390.4
(-1.4)
P 		546
(-0.1)
P 		910
(3)
P 		712
C 135.7
(-3)
P 		200.3
(-2.6)
P 		229.8
(-2.4)
P 		319.7
(-1.8)
P 		461.3
(-0.8)
P 		1037.2
(3)
P 		902
avr 165.6
(-3) 		183
(-2.9) 		233
(-2.5) 		336.9
(-1.7) 		547.9
(0) 		927.7
(3) 		762
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 84.8
(1.4)
P 		20.4
(-3)
P 		43.5
(-1.4)
P 		109.1
(3)
P 		89
B 61.3
(-0.9)
P 		36.1
(-2.9)
P 		34.2
(-3)
P 		111.2
(3)
P 		77
C 56.9
(-0.4)
P 		33.7
(-3)
P 		57.5
(-0.4)
P 		87.7
(3)
P 		54
avr 67.7
(0.1) 		30.1
(-3) 		45.1
(-1.8) 		102.7
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 30
(-3)
P 		50.9
(-2.3)
P 		50.5
(-2.3)
P 		76.3
(-1.4)
P 		192.1
(2.6)
P 		203.5
(3)
P 		174
B 69
(-2.8)
P 		68.5
(-2.8)
P 		57.6
(-3)
P 		103.4
(-2)
P 		221.8
(0.5)
P 		339.3
(3)
P 		282
C 50.3
(-3)
P 		61.1
(-2.8)
P 		58.5
(-2.8)
P 		64.3
(-2.7)
P 		149.3
(-1)
P 		347.2
(3)
P 		297
avr 49.8
(-3) 		60.2
(-2.7) 		55.5
(-2.9) 		81.3
(-2.2) 		187.7
(0.4) 		296.7
(3) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174186_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20159
Sequence Type Exemplar sequence
Representative Public ID C57167 NCBI
Target Description C57167_rc /REP_DB=TREMBL Accession /GB=C57167 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk280g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059247 NCBI Caenorhabditis elegans F46F11.8 (F46F11.8) mRNA, complete cds. 11/11 None
SNAP00000023452 ENSEMBL cdna:SNAP chromosome:CEL140:I:5624694:5626077:-1 11/11 None
GENEFINDER00000023462 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5624694:5626077:-1 11/11 None
F46F11.8 ENSEMBL cdna:known chromosome:CEL140:I:5624662:5626123:-1 gene:F46F11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5624677-5625163(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F11.8
Entrez Gene 172220 Entrez gene
SwissProt P91308 EMBL-EBI
WormBase CE26921 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21390 Hypothetical protein F46F11.8 [Caenorhabditis elegans] ref|NP_491648.1| F46F11.8 [Caenorhabditis elegans] 1.0E-177
blast T25769 hypothetical protein F46F11.8 - Caenorhabditis elegans 1.0E-151
blast CAE68919 Hypothetical protein CBG14898 [Caenorhabditis briggsae] 5.0E-63
Sequence
Target Sequence 
>C. ELEGANS:174186_S_AT
gtcaaaagttgactgtctctttgctaactgaaactcttctcaaaatcatttgcaagctgt
gcaacgcatgttttccggacgtttttgagaagtctccacctgccattaatacgattctcg
ctgtaaccacaccacaaaatgccaaactctcagttttcccgaatcttgatcgtctttact
gctcccgatacaatattccatatcgaagacattcgcttccaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAAAGTTGACTGTCTCTTTGCT 474 463 37 Antisense
GACTGTCTCTTTGCTAACTGAAACT 38 377 47 Antisense
GCTAACTGAAACTCTTCTCAAAATC 395 301 59 Antisense
GAAACTCTTCTCAAAATCATTTGCA 297 357 66 Antisense
GCAAGCTGTGCAACGCATGTTTTCC 561 319 88 Antisense
GCATGTTTTCCGGACGTTTTTGAGA 513 307 102 Antisense
GTTTTTGAGAAGTCTCCACCTGCCA 285 449 117 Antisense
TTTTCCCGAATCTTGATCGTCTTTA 103 677 190 Antisense
TCTTTACTGCTCCCGATACAATATT 298 615 209 Antisense
TTACTGCTCCCGATACAATATTCCA 420 681 212 Antisense
TATCGAAGACATTCGCTTCCACCGT 225 659 237 Antisense
Sequence Source Affymetrix Proprietary Database