[Home] | [Total List]

[174184_at]

Description C56363_rc /REP_DB=TREMBL Accession /GB=C56363 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk253f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1021
1 2 3 4 range
A 1751
(3)
P 		1292.3
(-1.4)
P 		1129.3
(-3)
P 		1663
(2.2)
P 		622
B 1771.7
(3)
P 		1365.5
(-0.2)
P 		1010.2
(-3)
P 		1757.2
(2.9)
P 		762
C 2023.2
(3)
P 		1439.3
(-0.4)
P 		1002
(-3)
P 		1658.4
(0.9)
P 		1021
avr 1848.6
(3) 		1365.7
(-0.6) 		1047.2
(-3) 		1692.9
(1.8) 		801

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 267.5
(-3)
P 		481.4
(-0.3)
P 		545.4
(0.5)
P 		740.2
(3)
P 		493.1
(-0.1)
P 		658
(2)
P 		473
B 328.4
(-3)
P 		365.7
(-2.3)
P 		558.1
(1.4)
P 		512.8
(0.5)
P 		501.3
(0.3)
P 		640.5
(3)
P 		312
C 413.3
(-2.1)
P 		374.6
(-3)
P 		634.6
(2.9)
P 		640.6
(3)
P 		555.9
(1.1)
P 		608.6
(2.3)
P 		266
avr 336.4
(-3) 		407.2
(-1.6) 		579.4
(1.9) 		631.2
(2.9) 		516.8
(0.6) 		635.7
(3) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 436
1 2 3 4 range
A 637.6
(3)
P 		280.5
(-2.4)
P 		295.2
(-2.2)
P 		243.4
(-3)
P 		394
B 565
(3)
P 		337.2
(-1.1)
P 		234.1
(-3)
P 		374.5
(-0.5)
P 		331
C 669.7
(3)
P 		413.8
(-0.9)
P 		349.2
(-1.9)
P 		279.6
(-3)
P 		390
avr 624.1
(3) 		343.8
(-2.1) 		292.8
(-3) 		299.2
(-2.9) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 49.3
(-3)
P 		171.2
(2.3)
P 		118.8
(0)
P 		187.7
(3)
P 		148.8
(1.3)
P 		160.2
(1.8)
P 		138
B 114.3
(-3)
P 		121.7
(-2.6)
P 		135.5
(-2)
P 		135.8
(-2)
P 		203.7
(1.3)
P 		238.8
(3)
P 		125
C 153.2
(-0.4)
P 		114.3
(-3)
P 		161.5
(0.2)
P 		128.8
(-2)
P 		179.9
(1.4)
P 		203.7
(3)
P 		89
avr 105.6
(-3) 		135.7
(-1.1) 		138.6
(-0.9) 		150.8
(-0.2) 		177.5
(1.5) 		200.9
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21658
Sequence Type Exemplar sequence
Representative Public ID C56363 NCBI
Target Description C56363_rc /REP_DB=TREMBL Accession /GB=C56363 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk253f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028315(11), NM_001028316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028315 NCBI Caenorhabditis elegans Y54G2A.10a (Y54G2A.10) mRNA, complete cds. 11/11 None
NM_001028316 NCBI Caenorhabditis elegans Y54G2A.10b (Y54G2A.10) mRNA, complete cds. 11/11 None
SNAP00000036475 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2799717:2800948:1 11/11 None
GENEFINDER00000036579 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2799717:2800948:1 11/11 None
Y54G2A.10a ENSEMBL cdna:known chromosome:CEL140:IV:2799717:2800948:1 gene:Y54G2A.10 11/11 None
Y54G2A.10b ENSEMBL cdna:known chromosome:CEL140:IV:2799936:2800953:1 gene:Y54G2A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2800393-2800911(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68523 Hypothetical protein Y54G2A.10a [Caenorhabditis elegans] ref|NP_001023486.1| Y54G2A.10a [Caenorhabditis elegans] 3.0E-86
blast AAL00869 Hypothetical protein Y54G2A.32 [Caenorhabditis elegans] ref|NP_500255.1| Y54G2A.32 [Caenorhabditis elegans] 4.0E-54
blast CAE68225 Hypothetical protein CBG13896 [Caenorhabditis briggsae] 2.0E-51
Sequence
Target Sequence 
>C. ELEGANS:174184_AT
aagcctacgcacagaacaaagccctaacctttatagactacagatattcccttgtgaaat
acgtaaactacctgttcaagcagggagttagctccaagttcctgacacaggccgaggcaa
ataatatgaagaaagttttctgggccgctgatgtgaaggctgccaacaactatactatga
cgtgcggacaattcatgatggacgctgcttcattggtgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTACGCACAGAACAAAGCCCT 337 149 19 Antisense
AAGCCCTAACCTTTATAGACTACAG 463 149 37 Antisense
TAGACTACAGATATTCCCTTGTGAA 164 653 52 Antisense
ATACGTAAACTACCTGTTCAAGCAG 372 7 77 Antisense
TTAGCTCCAAGTTCCTGACACAGGC 710 679 106 Antisense
AGTTCCTGACACAGGCCGAGGCAAA 290 65 115 Antisense
AGAAAGTTTTCTGGGCCGCTGATGT 168 73 148 Antisense
GGGCCGCTGATGTGAAGGCTGCCAA 121 493 160 Antisense
GAAGGCTGCCAACAACTATACTATG 362 333 173 Antisense
CTATACTATGACGTGCGGACAATTC 703 223 188 Antisense
GATGGACGCTGCTTCATTGGTGAAA 442 407 215 Antisense
Sequence Source Affymetrix Proprietary Database