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[174183_at]

Description C56553_rc /REP_DB=TREMBL Accession /GB=C56553 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk263f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 16      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 818
1 2 3 4 range
A 163.7
(-3)
P 		363.9
(-0.8)
P 		402.1
(-0.4)
P 		711.1
(3)
P 		547
B 202.1
(-3)
P 		329.1
(-1.4)
P 		447.1
(0.1)
P 		671.8
(3)
P 		470
C 132.2
(-3)
P 		331.5
(-1.5)
P 		358.2
(-1.3)
P 		949.7
(3)
P 		818
avr 166
(-3) 		341.5
(-1.3) 		402.5
(-0.7) 		777.5
(3) 		612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 505.6
(3)
P 		336.2
(-0.6)
P 		359.8
(-0.1)
P 		319.5
(-1)
P 		233.1
(-2.9)
P 		226.7
(-3)
P 		279
B 561.4
(3)
P 		337.8
(-1.3)
P 		415.1
(0.2)
P 		286.3
(-2.2)
P 		246.6
(-3)
P 		257
(-2.8)
P 		315
C 369.9
(2.6)
P 		305.6
(-0.6)
P 		378.1
(3)
P 		264.4
(-2.6)
P 		268
(-2.4)
P 		256.7
(-3)
P 		121
avr 479
(3) 		326.5
(-0.9) 		384.3
(0.6) 		290.1
(-1.9) 		249.2
(-2.9) 		246.8
(-3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 59.6
(-3)
P 		79
(-0.4)
P 		105.1
(3)
P 		104.1
(2.9)
P 		46
B 64.5
(-3)
P 		81.3
(-1.7)
P 		103.6
(-0)
P 		143.2
(3)
P 		79
C 43.7
(-3)
P 		95.3
(-0.3)
P 		124.9
(1.2)
P 		160.1
(3)
P 		116
avr 55.9
(-3) 		85.2
(-0.8) 		111.2
(1.2) 		135.8
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 93.2
(0.5)
P 		119.6
(3)
P 		78.3
(-0.8)
P 		81
(-0.6)
P 		70.4
(-1.6)
P 		55.2
(-3)
P 		64
B 195.3
(3)
P 		112.4
(-1.2)
P 		100.8
(-1.7)
P 		75.8
(-3)
P 		100.2
(-1.8)
P 		95.8
(-2)
P 		120
C 137.1
(3)
P 		93.2
(-0.1)
P 		96.2
(0.1)
P 		53.2
(-3)
P 		86.7
(-0.6)
P 		85.9
(-0.7)
P 		84
avr 141.9
(3) 		108.4
(0.2) 		91.8
(-1.2) 		70
(-3) 		85.8
(-1.7) 		79
(-2.2) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20716
Sequence Type Exemplar sequence
Representative Public ID C56553 NCBI
Target Description C56553_rc /REP_DB=TREMBL Accession /GB=C56553 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk263f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061955 NCBI Caenorhabditis elegans F08D12.7 (F08D12.7) mRNA, complete cds. 11/11 A 
SNAP00000023714 ENSEMBL cdna:SNAP chromosome:CEL140:II:2767270:2770888:-1 11/11 None
F08D12.7 ENSEMBL cdna:known chromosome:CEL140:II:2767270:2769117:-1 gene:F08D12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2767336-2768339(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08D12.7
Entrez Gene 173621 Entrez gene
SwissProt P91230 EMBL-EBI
WormBase CE27927 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68305 Hypothetical protein F08D12.7 [Caenorhabditis elegans] ref|NP_494356.1| F08D12.7 [Caenorhabditis elegans] 0.0
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 1.0E-171
blast AAK68305 Hypothetical protein F08D12.7 [Caenorhabditis elegans] ref|NP_494356.1| F08D12.7 [Caenorhabditis elegans] 1.0E-150
blast T25675 hypothetical protein F08D12.7 - Caenorhabditis elegans 1.0E-127
blast CAE72417 Hypothetical protein CBG19579 [Caenorhabditis briggsae] 1.0E-115
blast CAE72417 Hypothetical protein CBG19579 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 3.3E-59
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 12.0
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 3.3E-59
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 12.0
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-8
Sequence
Target Sequence 
>C. ELEGANS:174183_AT
caaaatcatgctcctacaacgacctggaacgcctgatcttccagagcaaaaaggactggt
ttgagctctacagcaccgagtttttcatctgcaaacggaagatgatgctcgacaagccga
ccgcaaaaaagttcccctgcatcggggaccataacattgcgggctcgaaaaaagaagaaa
catgtgagcggcacacaaagctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATCATGCTCCTACAACGACCT 98 191 56 Antisense
GACCTGGAACGCCTGATCTTCCAGA 339 383 76 Antisense
GGACTGGTTTGAGCTCTACAGCACC 382 525 108 Antisense
GAGCTCTACAGCACCGAGTTTTTCA 264 387 118 Antisense
GCACCGAGTTTTTCATCTGCAAACG 288 315 128 Antisense
GAAGATGATGCTCGACAAGCCGACC 412 337 153 Antisense
TGCTCGACAAGCCGACCGCAAAAAA 319 577 161 Antisense
GACCGCAAAAAAGTTCCCCTGCATC 209 383 174 Antisense
GTTCCCCTGCATCGGGGACCATAAC 521 439 186 Antisense
GGACCATAACATTGCGGGCTCGAAA 414 523 201 Antisense
ACATGTGAGCGGCACACAAAGCTGA 270 107 235 Antisense
Sequence Source Affymetrix Proprietary Database