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[174182_at]

Description CEC575_rc /REP_DB=TREMBL Accession /GB=C07575 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142e9 : 3prime end, single read.
Cluster 6grp_total > 57      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 15.2
(-2)
A 		9
(-2.5)
A 		3.4
(-3)
A 		74.5
(3)
A 		71
B 47.6
(0.5)
P 		5.3
(-3)
A 		25.7
(-1.3)
A 		76.8
(3)
P 		72
C 9.6
(-2.1)
A 		3.5
(-2.9)
A 		2.6
(-3)
A 		48.9
(3)
A 		46
avr 24.1
(-1.2) 		5.9
(-3) 		10.6
(-2.5) 		66.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 63.8
(2.6)
P 		24.7
(-2.1)
A 		17.7
(-3)
A 		44.7
(0.3)
A 		18.4
(-2.9)
A 		66.7
(3)
A 		49
B 22.9
(-1.9)
A 		32.3
(-0.8)
P 		14
(-3)
A 		37.1
(-0.2)
A 		22.5
(-2)
A 		63.5
(3)
P 		50
C 40.2
(-0.2)
A 		46.3
(0.3)
P 		29.4
(-1.1)
A 		52.6
(0.8)
A 		5.1
(-3)
A 		79.9
(3)
P 		75
avr 42.3
(-0) 		34.4
(-0.9) 		20.4
(-2.4) 		44.8
(0.2) 		15.3
(-3) 		70
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.6
(-0.2)
A 		2
(-2.3)
A 		0.9
(-3)
A 		10.9
(3)
A 		10
B 15.2
(2.5)
P 		1.3
(-3)
A 		5.9
(-1.2)
A 		16.4
(3)
P 		15
C 3.2
(-1.1)
A 		1
(-2.9)
A 		0.9
(-3)
A 		8.3
(3)
A 		7
avr 8
(0.8) 		1.4
(-3) 		2.6
(-2.3) 		11.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.8
(0.9)
P 		8.8
(-0.6)
A 		3.8
(-3)
A 		11.3
(0.6)
A 		5.6
(-2.1)
A 		16.2
(3)
A 		12
B 8
(-1.6)
A 		10.8
(-0.8)
P 		3.4
(-3)
A 		9.8
(-1.1)
A 		9.2
(-1.3)
A 		23.7
(3)
P 		20
C 14.9
(0.2)
A 		14.1
(-0)
P 		7.5
(-1.6)
A 		10.6
(-0.8)
A 		1.6
(-3)
A 		26.7
(3)
P 		25
avr 11.6
(-0.7) 		11.2
(-0.8) 		4.9
(-3) 		10.6
(-1) 		5.5
(-2.8) 		22.2
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174182_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21527
Sequence Type Exemplar sequence
Representative Public ID CEC575 NCBI
Target Description CEC575_rc /REP_DB=TREMBL Accession /GB=C07575 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067730 NCBI Caenorhabditis elegans Y41D4A.3 (Y41D4A.3) mRNA, complete cds. 11/11 None
Y41D4A.3 ENSEMBL cdna:known chromosome:CEL140:IV:1754753:1755749:1 gene:Y41D4A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028256 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1754768-1754922(+) 55.0 55.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4A.3
Entrez Gene 176984 Entrez gene
SwissProt Q8WTM1 EMBL-EBI
WormBase CE31646 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68453 Hypothetical protein Y41D4A.3 [Caenorhabditis elegans] ref|NP_500131.2| Y41D4A.3 [Caenorhabditis elegans] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:174182_AT
tattgatactttatccgatcggatatcaagagatcttgcataaaggtggttatgatgttc
gacgaattgatggaacagaggcaactatggatgtttatcggaatcgggcgtggatgtaca
tttcatcatattaatacccggtcagatgtcagtcacgcaatatggatcaccatgttctat
tttcacacagcctatccatccgtgcacaagagcaaccgcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGATACTTTATCCGATCGGATA 319 665 35 Antisense
GGTGGTTATGATGTTCGACGAATTG 475 499 79 Antisense
GATGGAACAGAGGCAACTATGGATG 378 405 103 Antisense
GGATGTTTATCGGAATCGGGCGTGG 228 515 123 Antisense
GAATCGGGCGTGGATGTACATTTCA 209 327 135 Antisense
TTCATCATATTAATACCCGGTCAGA 278 689 156 Antisense
GTCAGTCACGCAATATGGATCACCA 302 467 182 Antisense
GGATCACCATGTTCTATTTTCACAC 676 511 198 Antisense
TGTTCTATTTTCACACAGCCTATCC 450 561 207 Antisense
CCTATCCATCCGTGCACAAGAGCAA 408 269 225 Antisense
TCCGTGCACAAGAGCAACCGCAGCG 223 593 233 Antisense
Sequence Source Affymetrix Proprietary Database