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[174180_at]

Description C38229_rc /REP_DB=TREMBL Accession /GB=C38229 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk489h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 02      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 11      6grp_total > 07      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1580
1 2 3 4 range
A 2309.5
(3)
P 		1572.3
(0)
P 		1214.8
(-1.4)
P 		828.6
(-3)
P 		1481
B 2029.3
(3)
P 		1766.9
(1.3)
P 		1257.2
(-1.9)
P 		1080.6
(-3)
P 		949
C 2408.6
(3)
P 		1841.8
(0.5)
P 		1472.4
(-1.1)
P 		1024.2
(-3)
P 		1384
avr 2249.1
(3) 		1727
(0.5) 		1314.8
(-1.4) 		977.8
(-3) 		1271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1784
1 2 3 4 5 6 range
A 2069
(3)
P 		1756.6
(1.3)
P 		1482.1
(-0.1)
P 		941.5
(-3)
P 		934.2
(-3)
P 		1004.5
(-2.6)
P 		1135
B 2470.1
(3)
P 		1682.2
(0.1)
P 		1905.3
(0.9)
P 		962.4
(-2.6)
P 		840.8
(-3)
P 		1291
(-1.3)
P 		1629
C 2149.1
(3)
P 		1587.9
(0.7)
P 		1364.5
(-0.2)
P 		1236.7
(-0.7)
P 		686.6
(-3)
P 		1090.5
(-1.3)
P 		1463
avr 2229.4
(3) 		1675.6
(0.6) 		1584
(0.3) 		1046.9
(-2) 		820.5
(-3) 		1128.7
(-1.7) 		1409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 720
1 2 3 4 range
A 840.9
(3)
P 		341.3
(-1.2)
P 		317.6
(-1.4)
P 		121.3
(-3)
P 		720
B 647.1
(3)
P 		436.4
(-0)
P 		291.3
(-2.1)
P 		230.3
(-3)
P 		417
C 797.3
(3)
P 		529.5
(0.4)
P 		513.2
(0.3)
P 		172.7
(-3)
P 		625
avr 761.8
(3) 		435.7
(-0.3) 		374
(-1) 		174.8
(-3) 		587

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 381.4
(-0.8)
P 		624.7
(3)
P 		322.8
(-1.7)
P 		238.8
(-3)
P 		281.9
(-2.3)
P 		244.6
(-2.9)
P 		386
B 859.5
(3)
P 		559.9
(0)
P 		462.7
(-0.9)
P 		254.9
(-3)
P 		341.6
(-2.1)
P 		481.4
(-0.8)
P 		605
C 796.6
(3)
P 		484.5
(-0.3)
P 		347.3
(-1.7)
P 		248.7
(-2.7)
P 		222.2
(-3)
P 		365.1
(-1.5)
P 		574
avr 679.2
(3) 		556.4
(1.3) 		377.6
(-1.2) 		247.5
(-3) 		281.9
(-2.5) 		363.7
(-1.4) 		432
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21922
Sequence Type Exemplar sequence
Representative Public ID C38229 NCBI
Target Description C38229_rc /REP_DB=TREMBL Accession /GB=C38229 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk489h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073480 NCBI Caenorhabditis elegans T02E9.5 (T02E9.5) mRNA, complete cds. 11/11 None
T02E9.5.1 ENSEMBL cdna:known chromosome:CEL140:V:11344677:11347323:1 gene:T02E9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11346958-11347238(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02E9.5
Entrez Gene 179568 Entrez gene
SwissProt Q9U382 EMBL-EBI
WormBase CE31981 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54299 Hypothetical protein T02E9.5 [Caenorhabditis elegans] ref|NP_505881.2| T02E9.5 [Caenorhabditis elegans] 1.0E-94
blast CAE75225 Hypothetical protein CBG23175 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505881.2 3 10-32,57-74,169-187
T02E9.5.1 3 10-32,57-74,169-187
Sequence
Target Sequence 
>C. ELEGANS:174180_AT
gatctttcaatttcatattattaccctcaaacatcttcctcttcatagttatgttgtgta
gcctgaattcccttttttctccaagcgttttcagattctcaatgatttcgcaatttgtac
ggtgatgctctacgattattggagttgtgactcaaaaaaacattttaaacaagaaaaaat
tcaaaaattcaaaaaaatactccgaccacccaaatatcaatgctttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTTCAATTTCATATTATTACC 550 419 13 Antisense
TATTATTACCCTCAAACATCTTCCT 603 659 28 Antisense
CATCTTCCTCTTCATAGTTATGTTG 322 213 44 Antisense
ATGTTGTGTAGCCTGAATTCCCTTT 615 41 63 Antisense
CTTTTTTCTCCAAGCGTTTTCAGAT 298 223 84 Antisense
CTCCAAGCGTTTTCAGATTCTCAAT 607 235 91 Antisense
TTCAGATTCTCAATGATTTCGCAAT 130 689 102 Antisense
GATTTCGCAATTTGTACGGTGATGC 680 427 116 Antisense
ACGGTGATGCTCTACGATTATTGGA 53 97 131 Antisense
TCCGACCACCCAAATATCAATGCTT 115 595 213 Antisense
ACCACCCAAATATCAATGCTTTCAA 382 85 217 Antisense
Sequence Source Affymetrix Proprietary Database