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[174178_at]

Description C30850_rc /REP_DB=TREMBL Accession /GB=C30850 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      6grp_highest_nonorm > 62      6grp_total > 0      4grp_total > 57      6grp_total_sub > Hat      6grp_cgc > 64      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1511
1 2 3 4 range
A 6.9
(-3)
A 		1217.3
(2.6)
P 		1299.3
(3)
P 		112.9
(-2.5)
M 		1292
B 22.8
(-3)
A 		1060.5
(2.5)
P 		1165.1
(3)
P 		32.4
(-2.9)
A 		1142
C 40.7
(-3)
A 		1030.5
(1)
P 		1517.5
(3)
P 		90.5
(-2.8)
A 		1477
avr 23.5
(-3) 		1102.8
(2) 		1327.3
(3) 		78.6
(-2.7) 		1304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 893
1 2 3 4 5 6 range
A 274.6
(-3)
P 		1094.9
(3)
P 		350.4
(-2.4)
P 		423.6
(-1.9)
P 		623
(-0.5)
P 		390.2
(-2.2)
P 		820
B 201.7
(-3)
P 		814.2
(3)
P 		272.7
(-2.3)
P 		609.1
(1)
P 		450.1
(-0.6)
P 		279.4
(-2.2)
P 		613
C 255.4
(-3)
P 		868.6
(3)
P 		462.4
(-1)
P 		497.1
(-0.6)
P 		588.9
(0.3)
P 		254.2
(-3)
P 		614
avr 243.9
(-3) 		925.9
(3) 		361.8
(-2) 		509.9
(-0.7) 		554
(-0.3) 		307.9
(-2.4) 		682
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 526
1 2 3 4 range
A 2.5
(-3)
A 		264.2
(1.7)
P 		339.7
(3)
P 		16.5
(-2.8)
M 		337
B 7.3
(-3)
A 		261.9
(2.8)
P 		270
(3)
P 		6.9
(-3)
A 		263
C 13.5
(-3)
A 		296.3
(0.3)
P 		528.9
(3)
P 		15.3
(-3)
A 		515
avr 7.8
(-3) 		274.1
(1.3) 		379.5
(3) 		12.9
(-2.9) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 50.6
(-3)
P 		389.4
(3)
P 		76.3
(-2.5)
P 		107.4
(-2)
P 		188
(-0.6)
P 		95
(-2.2)
P 		339
B 70.2
(-2.9)
P 		271
(3)
P 		66.2
(-3)
P 		161.3
(-0.2)
P 		182.9
(0.4)
P 		104.2
(-1.9)
P 		205
C 94.7
(-2.7)
P 		265
(3)
P 		117.7
(-1.9)
P 		100
(-2.5)
P 		190.5
(0.5)
P 		85.1
(-3)
P 		180
avr 71.8
(-3) 		308.5
(3) 		86.7
(-2.6) 		122.9
(-1.7) 		187.1
(-0.1) 		94.8
(-2.4) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21783
Sequence Type Exemplar sequence
Representative Public ID C30850 NCBI
Target Description C30850_rc /REP_DB=TREMBL Accession /GB=C30850 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk291a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072093 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-13) (pqn-13) mRNA, complete cds. 11/11 None
C14C11.8 ENSEMBL cdna:known chromosome:CEL140:V:5672206:5678682:-1 gene:C14C11.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5672277-5672565(-) 97.57 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-13
Ensembl C14C11.8
Entrez Gene 178954 Entrez gene
SwissProt Q17982 EMBL-EBI
WormBase CE36269 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MG-U74BV2:114098_AT similar to keratin associated protein 10-4; keratin associated protein 18-4 mm
Protein Similarities
Method ID Description E-Value
blast AAA96110 Prion-like-(q/n-rich)-domain-bearing protein protein 13 [Caenorhabditis elegans] ref|NP_504494.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-13) [Caenorhabditis elegans] 8.0E-77
blast CAE64591 Hypothetical protein CBG09346 [Caenorhabditis briggsae] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:174178_AT
tattttgtttgtcttcgtatctatcaccgcccacaatcatatctttcaaaaaaacaatcc
taccgatcttttaagcacgaaatgaccaattctcgttttacttaattattccaaaatgtc
tttcccatattctttgttttctttcaattgccacttttcacccagtctttctgaatattt
gtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTGTTTGTCTTCGTATCTATC 409 663 14 Antisense
TGTTTGTCTTCGTATCTATCACCGC 329 561 19 Antisense
CGCCCACAATCATATCTTTCAAAAA 243 257 41 Antisense
CAATCCTACCGATCTTTTAAGCACG 380 145 68 Antisense
GATCTTTTAAGCACGAAATGACCAA 580 365 78 Antisense
ATGACCAATTCTCGTTTTACTTAAT 669 45 95 Antisense
TAATTATTCCAAAATGTCTTTCCCA 7 635 116 Antisense
TGTCTTTCCCATATTCTTTGTTTTC 303 559 130 Antisense
TTTCTTTCAATTGCCACTTTTCACC 235 671 151 Antisense
ACTTTTCACCCAGTCTTTCTGAATA 132 103 166 Antisense
CACCCAGTCTTTCTGAATATTTGTC 116 187 172 Antisense
Sequence Source Affymetrix Proprietary Database