[Home] | [Total List]

[174176_at]

Description C35512_rc /REP_DB=TREMBL Accession /GB=C35512 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk434a9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 08      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 50      6grp_total > 19      4grp_total > 52      6grp_cgc > 01      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 705
1 2 3 4 range
A 749.2
(3)
P 		571
(0.4)
P 		670
(1.8)
P 		345.4
(-3)
P 		404
B 802.4
(3)
P 		655
(1.4)
P 		622.3
(1.1)
P 		241.5
(-3)
P 		561
C 656.9
(0.4)
P 		946.3
(3)
P 		559.9
(-0.5)
P 		278.5
(-3)
P 		668
avr 736.2
(3) 		724.1
(2.8) 		617.4
(1.4) 		288.5
(-3) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 860
1 2 3 4 5 6 range
A 972.7
(3)
P 		715.3
(0.3)
P 		466
(-2.3)
P 		460.8
(-2.4)
P 		621.3
(-0.7)
P 		400.5
(-3)
P 		572
B 1026.4
(3)
P 		410.9
(-1.3)
P 		166.9
(-3)
P 		598.6
(0)
P 		489.7
(-0.7)
P 		285.9
(-2.2)
P 		860
C 907.1
(3)
P 		535.2
(-0.5)
P 		492.6
(-0.9)
P 		401.5
(-1.7)
P 		552.2
(-0.3)
P 		263.4
(-3)
P 		644
avr 968.7
(3) 		553.8
(-0.8) 		375.2
(-2.5) 		487
(-1.4) 		554.4
(-0.8) 		316.6
(-3) 		652
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 272.8
(3)
P 		123.9
(-1)
P 		175.2
(0.4)
P 		50.6
(-3)
P 		222
B 255.9
(3)
P 		161.8
(0.2)
P 		144.2
(-0.3)
P 		51.5
(-3)
P 		204
C 217.5
(1.5)
P 		272.1
(3)
P 		195.1
(0.9)
P 		47
(-3)
P 		225
avr 248.7
(3) 		185.9
(1.1) 		171.5
(0.7) 		49.7
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 179.3
(0.1)
P 		254.4
(3)
P 		101.5
(-2.8)
P 		116.9
(-2.3)
P 		187.5
(0.4)
P 		97.5
(-3)
P 		157
B 357.1
(3)
P 		136.8
(-1.2)
P 		40.5
(-3)
P 		158.5
(-0.8)
P 		199
(0)
P 		106.6
(-1.7)
P 		317
C 336.2
(3)
P 		163.3
(-1.1)
P 		125.4
(-2)
P 		80.7
(-3)
P 		178.7
(-0.7)
P 		88.2
(-2.8)
P 		256
avr 290.9
(3) 		184.8
(-0.2) 		89.1
(-3) 		118.7
(-2.1) 		188.4
(-0) 		97.4
(-2.8) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22058
Sequence Type Exemplar sequence
Representative Public ID C35512 NCBI
Target Description C35512_rc /REP_DB=TREMBL Accession /GB=C35512 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk434a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029477(11), NM_001029478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029477 NCBI Caenorhabditis elegans Wrapper/Rega-1/Klingon homolog family member (wrk-1) (wrk-1) mRNA, complete cds. 11/11 None
NM_001029478 NCBI Caenorhabditis elegans Wrapper/Rega-1/Klingon homolog family member (wrk-1) (wrk-1) mRNA, complete cds. 11/11 None
F41D9.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:8387096:8392518:-1 gene:F41D9.3 11/11 A 
F41D9.3c ENSEMBL cdna:known chromosome:CEL140:X:8387404:8392518:-1 gene:F41D9.3 11/11 None
F41D9.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:8387407:8392518:-1 gene:F41D9.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181093 5 2 NM_001029476 183649_at (11)
NM_001029477 174176_at (11), 183649_at (11)
NM_001029478 174176_at (11)
NM_001029480 183649_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8387453-8387750(-) 100.0 100.0
Public Domain and Genome References
Ensembl F41D9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54179 Wrapper/rega-1/klingon homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024648.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAL60234 immunoglobulin domain-containing protein WRK-1B [Caenorhabditis elegans] 0.0
blast AAV28344 Wrapper/rega-1/klingon homolog protein 1, isoform e [Caenorhabditis elegans] ref|NP_001024651.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAM54180 Wrapper/rega-1/klingon homolog protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024649.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAL60235 immunoglobulin domain-containing protein WRK-1C [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-7
Sequence
Target Sequence 
>C. ELEGANS:174176_AT
tcaaaaatatgttttctctgcatttttcctcacgtttagattcatattgaatgtgagccg
gtgttgctcccccaaatttccccattttcttccaatcctttctttcgtagttctgtcact
tttttccaaaactgttcacttttctctccacgaagaatacttacttttgtgatgatgctt
ttaaaaaattatgtaaaaaattcaaaaccctttccccctcattcccaatccacttaattt
actcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAATATGTTTTCTCTGCATTT 538 629 31 Antisense
TTTTCCTCACGTTTAGATTCATATT 241 677 54 Antisense
TGAATGTGAGCCGGTGTTGCTCCCC 441 573 78 Antisense
CCAATCCTTTCTTTCGTAGTTCTGT 595 275 122 Antisense
TTCGTAGTTCTGTCACTTTTTTCCA 177 695 134 Antisense
GTTCTGTCACTTTTTTCCAAAACTG 234 441 140 Antisense
TCACTTTTTTCCAAAACTGTTCACT 144 627 146 Antisense
TTCACTTTTCTCTCCACGAAGAATA 368 687 165 Antisense
TCTCTCCACGAAGAATACTTACTTT 97 611 173 Antisense
TACTTACTTTTGTGATGATGCTTTT 526 645 188 Antisense
TTCCCAATCCACTTAATTTACTCGG 634 695 252 Antisense
Sequence Source Affymetrix Proprietary Database