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[174175_at]

Description C51624_rc /REP_DB=TREMBL Accession /GB=C51624 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk220d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 60      6grp_total > 16      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 545.6
(3)
P 		484.3
(2.2)
P 		386.5
(0.9)
P 		83.8
(-3)
P 		462
B 494.7
(3)
P 		474.1
(2.6)
P 		324.5
(0.1)
P 		142.4
(-3)
P 		352
C 446.8
(3)
P 		415.6
(2.4)
P 		401.2
(2.1)
P 		135.1
(-3)
P 		312
avr 495.7
(3) 		458
(2.4) 		370.7
(1) 		120.4
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 599.7
(3)
P 		384.1
(-0.2)
P 		285.3
(-1.7)
P 		199.4
(-3)
P 		254.7
(-2.2)
P 		226.4
(-2.6)
P 		400
B 581.9
(3)
P 		444.2
(1)
P 		251.3
(-1.8)
P 		301.2
(-1.1)
P 		167.6
(-3)
P 		300.8
(-1.1)
P 		414
C 580.2
(3)
P 		372.7
(-0.2)
P 		262.5
(-2)
P 		196.7
(-3)
P 		301.2
(-1.4)
P 		215.6
(-2.7)
P 		384
avr 587.3
(3) 		400.3
(-0.2) 		266.4
(-2.4) 		232.4
(-3) 		241.2
(-2.9) 		247.6
(-2.7) 		355
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 198.7
(3)
P 		105.1
(-0)
P 		101.1
(-0.1)
P 		12.3
(-3)
P 		186
B 157.7
(3)
P 		117.1
(1.1)
P 		75.2
(-0.9)
P 		30.4
(-3)
P 		127
C 147.9
(3)
P 		119.5
(1.6)
P 		139.8
(2.6)
P 		22.8
(-3)
P 		125
avr 168.1
(3) 		113.9
(0.8) 		105.4
(0.4) 		21.8
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 110.5
(1.2)
P 		136.6
(3)
P 		62.1
(-2.2)
P 		50.6
(-3)
P 		76.9
(-1.2)
P 		55.1
(-2.7)
P 		86
B 202.5
(3)
P 		147.9
(0.7)
P 		61
(-3)
P 		79.8
(-2.2)
P 		68.1
(-2.7)
P 		112.2
(-0.8)
P 		142
C 215
(3)
P 		113.7
(-0.5)
P 		66.8
(-2.1)
P 		39.6
(-3)
P 		97.5
(-1)
P 		72.2
(-1.9)
P 		175
avr 176
(3) 		132.7
(0.8) 		63.3
(-2.7) 		56.7
(-3) 		80.8
(-1.8) 		79.8
(-1.8) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22189
Sequence Type Exemplar sequence
Representative Public ID C51624 NCBI
Target Description C51624_rc /REP_DB=TREMBL Accession /GB=C51624 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk220d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C51624
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C51624 C51624_rc /REP_DB=TREMBL Accession /GB=C51624 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk220d9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7143875-7144154(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174175_AT
tgttcccataactaataatttcctcttcctgtcgccttattgtcacattaccctcacctt
ccccggtgcccaaacgcgtgcacagcttgatgaaattttgcaaaattttgttaagcatct
tctgtttttttgtcttctttcctattattttgtgataatgttgaactgttcaactattct
aaattatcacgctaaactatttcctttatcaacgattctctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCCCATAACTAATAATTTCCTC 157 561 14 Antisense
TAACTAATAATTTCCTCTTCCTGTC 149 639 22 Antisense
TCCTGTCGCCTTATTGTCACATTAC 520 593 40 Antisense
CCCAAACGCGTGCACAGCTTGATGA 72 259 82 Antisense
GCGTGCACAGCTTGATGAAATTTTG 262 293 89 Antisense
ATTTTGTTAAGCATCTTCTGTTTTT 140 15 118 Antisense
TTTTGTCTTCTTTCCTATTATTTTG 406 677 141 Antisense
GTCTTCTTTCCTATTATTTTGTGAT 61 469 145 Antisense
GTTCAACTATTCTAAATTATCACGC 225 445 181 Antisense
ATTATCACGCTAAACTATTTCCTTT 698 13 196 Antisense
ATTTCCTTTATCAACGATTCTCTAT 590 17 212 Antisense
Sequence Source Affymetrix Proprietary Database