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[174173_at]

Description C57017_rc /REP_DB=TREMBL Accession /GB=C57017 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk308h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 04      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 03      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2680
1 2 3 4 range
A 3808.9
(3)
P 		2851.8
(-0.2)
P 		2320.8
(-2)
P 		2037.7
(-3)
P 		1771
B 4717.4
(3)
P 		2882.6
(-1.8)
P 		2416.9
(-3)
P 		3218.7
(-0.9)
P 		2301
C 4367.7
(3)
P 		2643.7
(-2.3)
P 		2788.9
(-1.9)
P 		2420.8
(-3)
P 		1947
avr 4298
(3) 		2792.7
(-2) 		2508.9
(-3) 		2559.1
(-2.8) 		1789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3878
1 2 3 4 5 6 range
A 4078.2
(3)
P 		3609.7
(1.9)
P 		2121.1
(-1.6)
P 		1940.8
(-2.1)
P 		1627.3
(-2.8)
P 		1551.1
(-3)
P 		2527
B 3586
(2.8)
P 		3663.8
(3)
P 		2679.5
(0.8)
P 		1643.2
(-1.5)
P 		1379.4
(-2.1)
P 		964.7
(-3)
P 		2699
C 4843.1
(3)
P 		3435.4
(0.8)
P 		2515
(-0.6)
P 		1960.5
(-1.5)
P 		1780.3
(-1.8)
P 		985.5
(-3)
P 		3858
avr 4169.1
(3) 		3569.6
(1.8) 		2438.5
(-0.5) 		1848.2
(-1.6) 		1595.7
(-2.1) 		1167.1
(-3) 		3002
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1206
1 2 3 4 range
A 1386.8
(3)
P 		619.1
(-1.2)
P 		606.7
(-1.3)
P 		298.3
(-3)
P 		1089
B 1504.3
(3)
P 		711.9
(-2)
P 		560.1
(-3)
P 		685.9
(-2.2)
P 		944
C 1445.8
(3)
P 		760.1
(-1)
P 		972
(0.3)
P 		408.2
(-3)
P 		1038
avr 1445.6
(3) 		697
(-1.6) 		712.9
(-1.5) 		464.1
(-3) 		982

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1465
1 2 3 4 5 6 range
A 751.8
(-0.5)
P 		1283.8
(3)
P 		461.9
(-2.4)
P 		492.2
(-2.2)
P 		491.1
(-2.2)
P 		377.6
(-3)
P 		906
B 1247.8
(3)
P 		1219.5
(2.8)
P 		650.7
(-1)
P 		435.2
(-2.5)
P 		560.4
(-1.6)
P 		359.7
(-3)
P 		888
C 1795.1
(3)
P 		1048.2
(-0.1)
P 		640.1
(-1.7)
P 		394.3
(-2.7)
P 		576.1
(-2)
P 		329.9
(-3)
P 		1465
avr 1264.9
(3) 		1183.8
(2.5) 		584.2
(-1.5) 		440.6
(-2.4) 		542.5
(-1.8) 		355.7
(-3) 		909
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22258
Sequence Type Exemplar sequence
Representative Public ID C57017 NCBI
Target Description C57017_rc /REP_DB=TREMBL Accession /GB=C57017 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk308h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076898 NCBI Caenorhabditis elegans C53C9.2 (C53C9.2) mRNA, complete cds. 11/11 None
C53C9.2 ENSEMBL cdna:known chromosome:CEL140:X:7686585:7689158:-1 gene:C53C9.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002526 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7686665-7686990(-) 78.47 100.0
Public Domain and Genome References
Gene Title
Ensembl C53C9.2
Entrez Gene 181031 Entrez gene
SwissProt Q09936 EMBL-EBI
WormBase CE27882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52603 Hypothetical protein C53C9.2 [Caenorhabditis elegans] ref|NP_509299.1| C53C9.2 [Caenorhabditis elegans] sp|Q09936|YSE2_CAEEL Hypothetical protein C53C9.2 in chromosome X 0.0
blast T15827 hypothetical protein C53C9.2 - Caenorhabditis elegans 0.0
blast CAE70260 Hypothetical protein CBG16761 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000557 EMBL-EBI Calponin repeat 1.5E-6
Pfam IPR000557 EMBL-EBI Calponin repeat 0.0037
Pfam IPR000557 EMBL-EBI Calponin repeat 2.1
Pfam IPR000557 EMBL-EBI Calponin repeat 8.9E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 0.46
Pfam IPR000557 EMBL-EBI Calponin repeat 1.7E-9
Sequence
Target Sequence 
>C. ELEGANS:174173_AT
aagacgagtagatcacttcaacgcaaactgccatatcaaaacttcacaacctgacttctg
acgacggaattacgataaattgaatcaattctaaaacacccccgcccccgtttctaacgt
ttgtttttctcattacatattattcgaccccctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACGAGTAGATCACTTCAACGCA 593 151 64 Antisense
GTAGATCACTTCAACGCAAACTGCC 93 457 71 Antisense
TCACTTCAACGCAAACTGCCATATC 269 627 76 Antisense
GCAAACTGCCATATCAAAACTTCAC 15 319 86 Antisense
AAAACTTCACAACCTGACTTCTGAC 281 131 101 Antisense
ACAACCTGACTTCTGACGACGGAAT 14 111 109 Antisense
GACTTCTGACGACGGAATTACGATA 601 371 116 Antisense
TGAATCAATTCTAAAACACCCCCGC 326 575 144 Antisense
TCTAACGTTTGTTTTTCTCATTACA 564 611 176 Antisense
AACGTTTGTTTTTCTCATTACATAT 508 143 179 Antisense
TCATTACATATTATTCGACCCCCTC 420 617 193 Antisense
Sequence Source Affymetrix Proprietary Database