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[174172_at]

Description C35234_rc /REP_DB=TREMBL Accession /GB=C35234 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk426h4 : 3prime end, single read.
Cluster 6grp_total > 35      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 68.1
(0.2)
M 		75.1
(1.3)
A 		48.3
(-3)
A 		86
(3)
P 		38
B 58.5
(1.9)
A 		29.6
(-1.9)
A 		21.4
(-3)
A 		66.7
(3)
A 		45
C 56.2
(1.3)
P 		65.7
(2.7)
A 		26.8
(-3)
A 		67.6
(3)
A 		41
avr 60.9
(1.2) 		56.8
(0.6) 		32.2
(-3) 		73.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 87.6
(3)
P 		48
(0.1)
A 		71.4
(1.8)
P 		59.3
(1)
A 		4.4
(-3)
A 		59
(0.9)
A 		83
B 47.5
(0.2)
P 		76.1
(3)
A 		30.6
(-1.5)
A 		15.6
(-3)
A 		29.3
(-1.6)
A 		24.4
(-2.1)
A 		61
C 59.6
(-0.6)
P 		127.4
(3)
P 		58.9
(-0.6)
P 		13.5
(-3)
A 		25.2
(-2.4)
A 		29.5
(-2.2)
A 		114
avr 64.9
(1.2) 		83.8
(3) 		53.6
(0.2) 		29.5
(-2.1) 		19.6
(-3) 		37.6
(-1.3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 24.8
(3)
M 		16.3
(-1.2)
A 		12.6
(-3)
A 		12.6
(-3)
P 		12
B 18.7
(3)
A 		7.3
(-2)
A 		5
(-3)
A 		14.2
(1)
A 		14
C 18.6
(2.8)
P 		18.9
(3)
A 		9.3
(-3)
A 		11.4
(-1.7)
A 		10
avr 20.7
(3) 		14.2
(-0.3) 		9
(-3) 		12.7
(-1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.2
(2.7)
P 		17.1
(3)
A 		15.5
(2.4)
P 		15
(2.2)
A 		1.3
(-3)
A 		14.4
(2)
A 		16
B 16.5
(0.5)
P 		25.3
(3)
A 		7.4
(-2.1)
A 		4.1
(-3)
A 		11.9
(-0.8)
A 		9.1
(-1.6)
A 		21
C 22.1
(0.2)
P 		38.9
(3)
P 		15
(-1)
P 		2.7
(-3)
A 		8.1
(-2.1)
A 		9.9
(-1.8)
A 		36
avr 18.3
(0.4) 		27.1
(3) 		12.6
(-1.4) 		7.3
(-2.9) 		7.1
(-3) 		11.1
(-1.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20788
Sequence Type Exemplar sequence
Representative Public ID C35234 NCBI
Target Description C35234_rc /REP_DB=TREMBL Accession /GB=C35234 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk426h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061669 NCBI Caenorhabditis elegans F36H5.10 (F36H5.10) mRNA, complete cds. 11/11 None
SNAP00000028519 ENSEMBL cdna:SNAP chromosome:CEL140:II:1757336:1757764:1 11/11 None
F36H5.10 ENSEMBL cdna:known chromosome:CEL140:II:1757202:1757764:1 gene:F36H5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1757468-1757748(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H5.10
Entrez Gene 173543 Entrez gene
SwissProt Q95ZM0 EMBL-EBI
WormBase CE29040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95875 Hypothetical protein F36H5.10 [Caenorhabditis elegans] ref|NP_494070.1| F36H5.10 [Caenorhabditis elegans] 1.0E-71
blast AAK95875 Hypothetical protein F36H5.10 [Caenorhabditis elegans] ref|NP_494070.1| F36H5.10 [Caenorhabditis elegans] 1.0E-56
blast AAK31515 Hypothetical protein F36H5.4 [Caenorhabditis elegans] ref|NP_494072.1| F36H5.4 [Caenorhabditis elegans] 3.0E-43
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 8.0E-43
blast AAK31515 Hypothetical protein F36H5.4 [Caenorhabditis elegans] ref|NP_494072.1| F36H5.4 [Caenorhabditis elegans] 4.0E-35
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 2.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494070.1 3 4-21,28-47,62-84
F36H5.10 3 4-21,28-47,62-84
SNAP00000028519 2 39-58,73-95
Sequence
Target Sequence 
>C. ELEGANS:174172_AT
gaagtcttctacatagctctaagcttcattgccttggatccgttggccgatgagtatgtg
tcttcggggtttttctatacaactcgattcatctgccctgcaatcaatatcctcgcaatt
ccaattgtctacgtggctttcttggcttataactctgaagagtttgcattcagtggactg
gagccgacaagtggaagattttggcatggagtgtacaagcggattgagaagtctggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCTTCTACATAGCTCTAAGCT 171 337 23 Antisense
TAGCTCTAAGCTTCATTGCCTTGGA 68 653 36 Antisense
GCTTCATTGCCTTGGATCCGTTGGC 87 305 45 Antisense
CTTGGATCCGTTGGCCGATGAGTAT 65 219 55 Antisense
GATGAGTATGTGTCTTCGGGGTTTT 150 411 71 Antisense
TGTGTCTTCGGGGTTTTTCTATACA 300 555 79 Antisense
TCATCTGCCCTGCAATCAATATCCT 288 621 111 Antisense
GAAGAGTTTGCATTCAGTGGACTGG 264 339 179 Antisense
CAGTGGACTGGAGCCGACAAGTGGA 156 209 193 Antisense
TGGCATGGAGTGTACAAGCGGATTG 644 545 224 Antisense
CAAGCGGATTGAGAAGTCTGGCGAA 164 187 238 Antisense
Sequence Source Affymetrix Proprietary Database