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[174171_at]

Description C38390_rc /REP_DB=TREMBL Accession /GB=C38390 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk492d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 01      6grp_total > 27      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1534
1 2 3 4 range
A 2716.6
(3)
P 		2669.7
(2.8)
P 		2330.7
(1.1)
P 		1514.4
(-3)
P 		1202
B 3048.2
(3)
P 		2437
(-1)
P 		2511.5
(-0.5)
P 		2125.5
(-3)
P 		923
C 2890.6
(3)
P 		2156.5
(-2.3)
P 		2495.4
(0.2)
P 		2055.8
(-3)
P 		835
avr 2885.1
(3) 		2421.1
(0.2) 		2445.9
(0.3) 		1898.6
(-3) 		987

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2004
1 2 3 4 5 6 range
A 3174.6
(3)
P 		1852.5
(-1)
P 		1462.7
(-2.1)
P 		1171
(-3)
P 		1663
(-1.5)
P 		2198.7
(0.1)
P 		2004
B 2897
(3)
P 		2150.8
(0.2)
P 		1581.5
(-2)
P 		1851.7
(-1)
P 		1325.5
(-3)
P 		2188.6
(0.3)
P 		1572
C 2585.9
(3)
P 		2011.9
(0.2)
P 		1449.9
(-2.6)
P 		1390.1
(-2.9)
P 		1359.7
(-3)
P 		2196.3
(1.1)
P 		1226
avr 2885.8
(3) 		2005.1
(-0.7) 		1498
(-2.8) 		1470.9
(-2.9) 		1449.4
(-3) 		2194.5
(0.1) 		1436
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 767
1 2 3 4 range
A 989.1
(3)
P 		579.5
(-0.2)
P 		609.3
(0)
P 		221.7
(-3)
P 		767
B 972
(3)
P 		601.9
(-1.3)
P 		582
(-1.5)
P 		452.9
(-3)
P 		519
C 956.9
(3)
P 		620
(-0.3)
P 		869.7
(2.1)
P 		346.6
(-3)
P 		610
avr 972.7
(3) 		600.5
(-0.5) 		687
(0.3) 		340.4
(-3) 		632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 728
1 2 3 4 5 6 range
A 585.2
(1.8)
P 		658.8
(3)
P 		318.5
(-2.6)
P 		297
(-3)
P 		501.8
(0.4)
P 		535.3
(1)
P 		362
B 1008
(3)
P 		715.9
(0.2)
P 		384
(-3)
P 		490.4
(-2)
P 		538.5
(-1.5)
P 		816.1
(1.2)
P 		624
C 958.5
(3)
P 		613.9
(-0)
P 		369
(-2.2)
P 		279.6
(-3)
P 		440
(-1.6)
P 		735.2
(1)
P 		679
avr 850.6
(3) 		662.9
(0.7) 		357.2
(-3) 		355.7
(-3) 		493.4
(-1.3) 		695.5
(1.1) 		495
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21663
Sequence Type Exemplar sequence
Representative Public ID C38390 NCBI
Target Description C38390_rc /REP_DB=TREMBL Accession /GB=C38390 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk492d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072424 NCBI Caenorhabditis elegans F09G2.9 (F09G2.9) mRNA, complete cds. 11/11 None
F09G2.9.2 ENSEMBL cdna:known chromosome:CEL140:V:7195898:7198730:-1 gene:F09G2.9 11/11 A 
F09G2.9.1 ENSEMBL cdna:known chromosome:CEL140:V:7195898:7198729:-1 gene:F09G2.9 11/11 A 
F09G2.9.3 ENSEMBL cdna:known chromosome:CEL140:V:7196360:7198735:-1 gene:F09G2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7196382-7196728(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G2.9
Entrez Gene 179106 Entrez gene
SwissProt O17406 EMBL-EBI
WormBase CE09304 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504825 F09G2.9 [Caenorhabditis elegans] gb|AAB71317.1| Hypothetical protein F09G2.9 [Caenorhabditis elegans] 5.0E-59
blast CAE72018 Hypothetical protein CBG19100 [Caenorhabditis briggsae] 6.0E-48
Sequence
Target Sequence 
>C. ELEGANS:174171_AT
aaaatataaccatccccactgttgacaatttatttatcttattacctcctgaattgtttt
ctaaaaaattcaaaacttctctacgtcgacttttagaaatgagcttttttcaacgtagaa
tcatgcttttctcccactctctcaatgctcacccctggctgagtaaatatttaagagtac
ttgaatcgcaattgatcttcgtaagctttttttctaattgaaactcgactgacgagattt
ttcatccaacaactcctattttattctctggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATATAACCATCCCCACTGTTGA 663 131 49 Antisense
ACCATCCCCACTGTTGACAATTTAT 213 87 57 Antisense
ATTTATTTATCTTATTACCTCCTGA 615 15 76 Antisense
TATTACCTCCTGAATTGTTTTCTAA 506 663 88 Antisense
ATTCAAAACTTCTCTACGTCGACTT 163 13 116 Antisense
ACGTAGAATCATGCTTTTCTCCCAC 354 93 161 Antisense
ATGCTCACCCCTGGCTGAGTAAATA 482 39 193 Antisense
GAATCGCAATTGATCTTCGTAAGCT 22 331 231 Antisense
GATCTTCGTAAGCTTTTTTTCTAAT 665 417 242 Antisense
AGATTTTTCATCCAACAACTCCTAT 69 67 283 Antisense
CAACTCCTATTTTATTCTCTGGCTC 191 189 298 Antisense
Sequence Source Affymetrix Proprietary Database