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[174170_at]

Description C57314_rc /REP_DB=TREMBL Accession /GB=C57314 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk302a5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 38      4grp_high_8_8 > 02      6grp_highest_nonorm > 93      6grp_total > 69      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1158
1 2 3 4 range
A 964.4
(1.3)
P 		338
(-2.9)
P 		318.3
(-3)
P 		1209.6
(3)
P 		891
B 847.2
(0.7)
P 		361.7
(-3)
P 		361.7
(-3)
P 		1140.4
(3)
P 		779
C 831.3
(0)
P 		246.2
(-3)
P 		294.4
(-2.8)
P 		1404
(3)
P 		1158
avr 881
(0.6) 		315.3
(-3) 		324.8
(-2.9) 		1251.3
(3) 		936

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 323.3
(-1.2)
P 		361.1
(-0.4)
P 		383.2
(0)
P 		230.7
(-3)
P 		357.4
(-0.5)
P 		535.3
(3)
P 		305
B 471.8
(-0.1)
P 		499.6
(0.2)
P 		218
(-3)
P 		285.4
(-2.2)
P 		380.5
(-1.1)
P 		738.6
(3)
P 		521
C 498.3
(1.7)
P 		370.8
(-0.2)
P 		248.9
(-2)
P 		178.2
(-3)
P 		585.7
(3)
P 		431.6
(0.7)
P 		408
avr 431.1
(0.6) 		410.5
(0.2) 		283.4
(-2.1) 		231.4
(-3) 		441.2
(0.7) 		568.5
(3) 		337
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 351.1
(3)
P 		73.4
(-3)
P 		83.2
(-2.8)
P 		177.1
(-0.8)
P 		278
B 270.2
(3)
P 		89.3
(-2.8)
P 		83.8
(-3)
P 		243
(2.1)
P 		186
C 275.2
(3)
P 		70.8
(-3)
P 		102.6
(-2.1)
P 		236.7
(1.9)
P 		204
avr 298.8
(3) 		77.8
(-3) 		89.9
(-2.7) 		218.9
(0.8) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 59.6
(-2.9)
P 		128.4
(2.8)
P 		83.5
(-0.9)
P 		58.5
(-3)
P 		107.9
(1.1)
P 		130.3
(3)
P 		72
B 164.2
(0)
P 		166.3
(0.1)
P 		52.9
(-3)
P 		75.6
(-2.4)
P 		154.6
(-0.3)
P 		275.4
(3)
P 		223
C 184.7
(2.8)
P 		113.2
(0)
P 		63.4
(-1.9)
P 		35.8
(-3)
P 		189.5
(3)
P 		144.5
(1.2)
P 		154
avr 136.2
(0.8) 		136
(0.8) 		66.6
(-2.5) 		56.6
(-3) 		150.7
(1.5) 		183.4
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21113
Sequence Type Exemplar sequence
Representative Public ID C57314 NCBI
Target Description C57314_rc /REP_DB=TREMBL Accession /GB=C57314 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk302a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171168(11), NM_171167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171168 NCBI Caenorhabditis elegans C05D11.7a (C05D11.7) mRNA, complete cds. 11/11 None
NM_171167 NCBI Caenorhabditis elegans C05D11.7b (C05D11.7) mRNA, complete cds. 11/11 None
C05D11.7b ENSEMBL cdna:known chromosome:CEL140:III:6415715:6419390:-1 gene:C05D11.7 11/11 A 
C05D11.7a.2 ENSEMBL cdna:known chromosome:CEL140:III:6415715:6421648:-1 gene:C05D11.7 11/11 A 
C05D11.7a.1 ENSEMBL cdna:known chromosome:CEL140:III:6415715:6419393:-1 gene:C05D11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6415758-6416076(-) 100.0 100.0
Public Domain and Genome References
Ensembl C05D11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53832 Hypothetical protein C05D11.7a [Caenorhabditis elegans] ref|NP_741196.1| C05D11.7a [Caenorhabditis elegans] sp|Q11186|YPD7_CAEEL Hypothetical protein C05D11.7 in chromosome III 0.0
blast AAM15547 Hypothetical protein C05D11.7b [Caenorhabditis elegans] ref|NP_741195.1| C05D11.7b [Caenorhabditis elegans] 0.0
blast C88482 protein C05D11.7 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 7.3E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741196.1 2 10-32,45-67
NP_741195.1 2 10-32,45-67
C05D11.7b 2 10-32,45-67
C05D11.7a.2 2 10-32,45-67
C05D11.7a.1 2 10-32,45-67
Sequence
Target Sequence 
>C. ELEGANS:174170_AT
gtgtcatttatgaatcctgtgacccatctactcttttcccattttttgttcattttgtac
cgatttatgtatatttttgtacacttgtttggtagggattatggattctaaatccaaatt
taccaataacccttacctctttcgttttttttctcagtgcccacgggttggaattcatcc
aacagtcaaccaaaaattctgaattatttcgttgttcgttctttaatattgtgctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCATTTATGAATCCTGTGACCC 318 487 27 Antisense
TTATGAATCCTGTGACCCATCTACT 603 679 34 Antisense
TTTTGTTCATTTTGTACCGATTTAT 186 677 70 Antisense
GTATATTTTTGTACACTTGTTTGGT 283 453 95 Antisense
ACACTTGTTTGGTAGGGATTATGGA 301 111 107 Antisense
TTTTTCTCAGTGCCCACGGGTTGGA 79 675 174 Antisense
GTGCCCACGGGTTGGAATTCATCCA 360 477 183 Antisense
ATCCAACAGTCAACCAAAAATTCTG 235 41 203 Antisense
AATTCTGAATTATTTCGTTGTTCGT 611 175 221 Antisense
TTTCGTTGTTCGTTCTTTAATATTG 407 671 233 Antisense
GTTCGTTCTTTAATATTGTGCTTTT 37 443 240 Antisense
Sequence Source Affymetrix Proprietary Database