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[174168_s_at]

Description C36214_rc /REP_DB=TREMBL Accession /GB=C36214 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk456b5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 85      6grp_total > 27      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 955.4
(3)
P 		664.4
(-1.7)
P 		587.4
(-3)
P 		652.5
(-1.9)
P 		368
B 892.7
(0.9)
P 		780.7
(-0.3)
P 		542.9
(-3)
P 		1075.2
(3)
P 		532
C 1085.5
(3)
P 		747.1
(-2.5)
P 		716.9
(-3)
P 		880.6
(-0.3)
P 		369
avr 977.9
(3) 		730.7
(-1.1) 		615.7
(-3) 		869.4
(1.2) 		362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 617
1 2 3 4 5 6 range
A 1121.3
(3)
P 		789.3
(-0.2)
P 		557.2
(-2.5)
P 		504.2
(-3)
P 		855.7
(0.4)
P 		710.3
(-1)
P 		617
B 1117.3
(3)
P 		991.7
(1.6)
P 		729.2
(-1.4)
P 		679.4
(-2)
P 		587
(-3)
P 		1116
(3)
P 		530
C 803.4
(1.8)
P 		879.1
(3)
P 		636.9
(-1)
P 		513.1
(-3)
P 		625.2
(-1.2)
P 		742.4
(0.8)
P 		366
avr 1014
(3) 		886.7
(1.3) 		641.1
(-2) 		565.6
(-3) 		689.3
(-1.3) 		856.2
(0.9) 		448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 347.9
(3)
P 		144.2
(-1.8)
P 		153.6
(-1.6)
P 		95.5
(-3)
P 		252
B 284.7
(3)
P 		192.8
(-0.5)
P 		125.8
(-3)
P 		229.1
(0.9)
P 		159
C 359.3
(3)
P 		214.8
(-1.1)
P 		249.9
(-0.1)
P 		148.5
(-3)
P 		211
avr 330.6
(3) 		183.9
(-2.1) 		176.4
(-2.4) 		157.7
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 206.7
(0.2)
P 		280.7
(3)
P 		121.4
(-3)
P 		127.9
(-2.8)
P 		258.2
(2.2)
P 		172.9
(-1.1)
P 		159
B 388.8
(2.3)
P 		330.1
(0.8)
P 		177.1
(-3)
P 		180
(-2.9)
P 		238.5
(-1.5)
P 		416.1
(3)
P 		239
C 297.8
(3)
P 		268.2
(2.1)
P 		162.1
(-1.2)
P 		103.2
(-3)
P 		202.3
(0.1)
P 		248.5
(1.5)
P 		195
avr 297.8
(3) 		293
(2.8) 		153.5
(-2.4) 		137
(-3) 		233
(0.6) 		279.2
(2.3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174168_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20873
Sequence Type Exemplar sequence
Representative Public ID C36214 NCBI
Target Description C36214_rc /REP_DB=TREMBL Accession /GB=C36214 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk456b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062699 NCBI Caenorhabditis elegans F59E12.9 (F59E12.9) mRNA, complete cds. 11/11 None
F59E12.9 ENSEMBL cdna:known chromosome:CEL140:II:5640048:5647011:-1 gene:F59E12.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5640106-5640397(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59E12.9
Entrez Gene 173953 Entrez gene
SwissProt O01900 EMBL-EBI
WormBase CE11534 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54259 Hypothetical protein F59E12.9 [Caenorhabditis elegans] ref|NP_495100.1| F59E12.9 [Caenorhabditis elegans] 0.0
blast CAE59153 Hypothetical protein CBG02458 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174168_S_AT
cccaatttatagctctcgttcactttttacatgaccggtacaaaaaacaatgactgacga
atatactccaccaattagtatatatcacttggcttcttaggttctaaaatgatgcattat
gtgccaattttcataagtttatttcgattctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAATTTATAGCTCTCGTTCACTT 364 257 43 Antisense
TATAGCTCTCGTTCACTTTTTACAT 666 659 50 Antisense
GCTCTCGTTCACTTTTTACATGACC 421 299 54 Antisense
GTTCACTTTTTACATGACCGGTACA 77 445 60 Antisense
GACCGGTACAAAAAACAATGACTGA 643 379 75 Antisense
ATGACTGACGAATATACTCCACCAA 490 43 92 Antisense
ACTCCACCAATTAGTATATATCACT 299 99 107 Antisense
GTATATATCACTTGGCTTCTTAGGT 591 453 120 Antisense
ATCACTTGGCTTCTTAGGTTCTAAA 144 21 126 Antisense
TGATGCATTATGTGCCAATTTTCAT 25 567 152 Antisense
TTCATAAGTTTATTTCGATTCTCCT 611 687 172 Antisense
Sequence Source Affymetrix Proprietary Database