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[174166_at]

Description C38649_rc /REP_DB=TREMBL Accession /GB=C38649 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 02      6grp_total > 16      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2255
1 2 3 4 range
A 3082.3
(3)
P
2929.4
(2.5)
P
2411.6
(0.8)
P
1278.4
(-3)
P
1804
B 2875.6
(2.9)
P
2900.8
(3)
P
2255.8
(0.9)
P
1066.6
(-3)
P
1834
C 3006.4
(2.3)
P
3276.9
(3)
P
2116.7
(-0.1)
P
1021.6
(-3)
P
2255
avr 2988.1
(2.9)
3035.7
(3)
2261.4
(0.6)
1122.2
(-3)
1914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3277
1 2 3 4 5 6 range
A 3485.8
(3)
P
3093.5
(1.9)
P
1429.6
(-3)
P
1463.6
(-2.9)
P
1834
(-1.8)
P
1651.1
(-2.4)
P
2056
B 3261.6
(3)
P
2392.9
(0.5)
P
1601
(-1.8)
P
1330.1
(-2.6)
P
1629.1
(-1.7)
P
1194.7
(-3)
P
2067
C 4342.4
(3)
P
2285.7
(-0.8)
P
2029.4
(-1.2)
P
1065
(-3)
P
2060.5
(-1.2)
P
1282.6
(-2.6)
P
3277
avr 3696.6
(3)
2590.7
(0.2)
1686.7
(-2)
1286.2
(-3)
1841.2
(-1.6)
1376.1
(-2.8)
2410
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 950
1 2 3 4 range
A 1122.3
(3)
P
635.9
(-0.1)
P
630.4
(-0.2)
P
187.1
(-3)
P
935
B 917
(3)
P
716.4
(1.3)
P
522.7
(-0.4)
P
227.3
(-3)
P
690
C 995.2
(3)
P
942.1
(2.6)
P
737.7
(1.1)
P
172.3
(-3)
P
823
avr 1011.5
(3)
764.8
(1.2)
630.3
(0.2)
195.6
(-3)
816

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1395
1 2 3 4 5 6 range
A 642.6
(-0.5)
P
1100.2
(3)
P
311.3
(-3)
P
371.2
(-2.5)
P
553.4
(-1.2)
P
402
(-2.3)
P
789
B 1134.9
(3)
P
796.5
(0.4)
P
388.8
(-2.7)
P
352.3
(-3)
P
661.9
(-0.6)
P
445.5
(-2.3)
P
783
C 1609.5
(3)
P
697.4
(-0.9)
P
516.5
(-1.7)
P
214.2
(-3)
P
666.7
(-1.1)
P
429.3
(-2.1)
P
1395
avr 1129
(3)
864.7
(1.1)
405.5
(-2.3)
312.6
(-3)
627.3
(-0.7)
425.6
(-2.2)
816
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20528
Sequence Type Exemplar sequence
Representative Public ID C38649 NCBI
Target Description C38649_rc /REP_DB=TREMBL Accession /GB=C38649 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063758(11), NM_001027360(11), NM_001027362(11), NM_001027361(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_063758 NCBI Caenorhabditis elegans gaLECtin family member (lec-3) (lec-3) mRNA, complete cds. 11/11 A 
NM_001027360 NCBI Caenorhabditis elegans gaLECtin family member (lec-3) (lec-3) mRNA, complete cds. 11/11 None
NM_001027362 NCBI Caenorhabditis elegans gaLECtin family member (lec-3) (lec-3) mRNA, complete cds. 11/11 None
NM_001027361 NCBI Caenorhabditis elegans gaLECtin family member (lec-3) (lec-3) mRNA, complete cds. 11/11 None
ZK892.1a ENSEMBL cdna:known chromosome:CEL140:II:9991280:10000248:1 gene:ZK892.1 11/11 A 
ZK892.1b ENSEMBL cdna:known chromosome:CEL140:II:9991320:10000244:1 gene:ZK892.1 11/11 A 
ZK892.1d ENSEMBL cdna:known chromosome:CEL140:II:9993531:10000256:1 gene:ZK892.1 11/11 A 
ZK892.1c ENSEMBL cdna:known chromosome:CEL140:II:9993845:10000248:1 gene:ZK892.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174557 5 4 NM_001027360 174166_at (11), 189338_at (9)
NM_001027361 174166_at (11), 189338_at (10)
NM_001027362 174166_at (11), 189338_at (11)
NM_063758 174166_at (11), 189338_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9999892-10000178(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK892.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD57721 Hypothetical protein ZK892.1d [Caenorhabditis elegans] ref|NP_001022533.1| gaLECtin family member (lec-3) [Caenorhabditis elegans] 0.0
blast CAA88570 Hypothetical protein ZK892.1a [Caenorhabditis elegans] ref|NP_496159.1| gaLECtin family member (lec-3) [Caenorhabditis elegans] sp|Q09581|LEC3_CAEEL 32 kDa beta-galactoside-binding lectin lec-3 (32 kDa GBP) dbj|BAB11969.1| galectin LEC-3 [Caenorhabditis elegans] 1.0E-174
blast CAD57721 Hypothetical protein ZK892.1d [Caenorhabditis elegans] ref|NP_001022533.1| gaLECtin family member (lec-3) [Caenorhabditis elegans] 1.0E-167
blast CAA88570 Hypothetical protein ZK892.1a [Caenorhabditis elegans] ref|NP_496159.1| gaLECtin family member (lec-3) [Caenorhabditis elegans] sp|Q09581|LEC3_CAEEL 32 kDa beta-galactoside-binding lectin lec-3 (32 kDa GBP) dbj|BAB11969.1| galectin LEC-3 [Caenorhabditis elegans] 1.0E-167
blast CAC42392 Hypothetical protein ZK892.1b [Caenorhabditis elegans] ref|NP_001022531.1| gaLECtin family member (lec-3) [Caenorhabditis elegans] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 5.6E-32
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.2E-46
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 1.1E-50
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 5.6E-32
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 1.3E-15
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.3E-29
Sequence
Target Sequence
>C. ELEGANS:174166_AT
actcatccagccactcatatagttcaccacgtccctagtttctttctatctctgatatat
ttgaaattcgccccaaaatcatcccttcacaatccaatatctgtcactttctccacgtct
ccatggtttctttttttttggttttttcctgaattttcaaaattcagtatctacgttttt
gtcccccaccacccgatttttcaattcatattctgcttttcca


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ACTCATCCAGCCACTCATATAGTTC 379 101 16 Antisense
TCCAGCCACTCATATAGTTCACCAC 616 589 21 Antisense
CCCTAGTTTCTTTCTATCTCTGATA 507 259 48 Antisense
AGTTTCTTTCTATCTCTGATATATT 547 63 52 Antisense
CTGATATATTTGAAATTCGCCCCAA 331 239 67 Antisense
TTTGAAATTCGCCCCAAAATCATCC 395 665 75 Antisense
TCATCCCTTCACAATCCAATATCTG 27 623 94 Antisense
ATCCCTTCACAATCCAATATCTGTC 698 37 96 Antisense
AATCCAATATCTGTCACTTTCTCCA 452 167 106 Antisense
TTCAAAATTCAGTATCTACGTTTTT 587 683 171 Antisense
TTTCAATTCATATTCTGCTTTTCCA 537 673 214 Antisense
Sequence Source Affymetrix Proprietary Database