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[174165_at]

Description C29421_rc /REP_DB=TREMBL Accession /GB=C29421 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk210c5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 49      4grp_high_8_8 > 19      6grp_total > 59      4grp_total > 22      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 76.4
(0.1)
P 		75.4
(-0)
P 		50.9
(-3)
A 		100.2
(3)
P 		49
B 68.8
(-0.7)
P 		74.3
(0.2)
P 		54.5
(-3)
P 		91.7
(3)
P 		37
C 102.3
(3)
P 		43.4
(-3)
A 		65.2
(-0.8)
P 		60.2
(-1.3)
P 		59
avr 82.5
(2.7) 		64.4
(-1.3) 		56.9
(-3) 		84
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 51.7
(-2.1)
M 		41.7
(-3)
P 		44.7
(-2.7)
P 		66
(-0.8)
P 		104
(2.6)
P 		108.7
(3)
P 		67
B 76.5
(1.4)
P 		90.2
(3)
P 		50.9
(-1.7)
P 		88.2
(2.8)
P 		40
(-3)
M 		76.8
(1.4)
P 		50
C 105.2
(3)
P 		64.3
(-1.8)
P 		64.7
(-1.7)
P 		65.8
(-1.6)
P 		53.9
(-3)
P 		69.1
(-1.2)
P 		51
avr 77.8
(1.6) 		65.4
(-0.7) 		53.4
(-3) 		73.3
(0.8) 		66
(-0.6) 		84.9
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 27.8
(3)
P 		16.4
(-1.7)
P 		13.3
(-3)
A 		14.7
(-2.4)
P 		15
B 21.9
(3)
P 		18.4
(0.7)
P 		12.6
(-3)
P 		19.5
(1.5)
P 		9
C 33.9
(3)
P 		12.5
(-2.4)
A 		22.7
(0.2)
P 		10.2
(-3)
P 		24
avr 27.9
(3) 		15.8
(-2.5) 		16.2
(-2.4) 		14.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 9.5
(-3)
M 		14.8
(-1.5)
P 		9.7
(-2.9)
P 		16.7
(-1)
P 		31.4
(3)
P 		26.5
(1.7)
P 		22
B 26.6
(1.8)
P 		30
(3)
P 		12.4
(-3)
P 		23.4
(0.7)
P 		16.3
(-1.7)
M 		28.6
(2.5)
P 		18
C 39
(3)
P 		19.6
(-1.5)
P 		16.5
(-2.2)
P 		13.2
(-3)
P 		17.5
(-2)
P 		23.1
(-0.7)
P 		26
avr 25
(2.5) 		21.5
(0.9) 		12.9
(-3) 		17.8
(-0.8) 		21.7
(1) 		26.1
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21011
Sequence Type Exemplar sequence
Representative Public ID C29421 NCBI
Target Description C29421_rc /REP_DB=TREMBL Accession /GB=C29421 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk210c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065290 NCBI Caenorhabditis elegans Y53G8AR.2a (Y53G8AR.2) mRNA, complete cds. 11/11 None
Y53G8AR.2a ENSEMBL cdna:known chromosome:CEL140:III:3322959:3331655:1 gene:Y53G8AR.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011803 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011812 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175435 2 1 NM_065290 174165_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3330047-3331581(+) 84.6 100.0
Public Domain and Genome References
Ensembl Y53G8AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59546 Hypothetical protein Y53G8AR.2a [Caenorhabditis elegans] ref|NP_497691.1| Y53G8AR.2a [Caenorhabditis elegans] 0.0
blast AAO12399 Hypothetical protein Y53G8AR.2b [Caenorhabditis elegans] ref|NP_871639.1| Y53G8AR.2b [Caenorhabditis elegans] 0.0
blast CAE69485 Hypothetical protein CBG15688 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.1E-10
Sequence
Target Sequence 
>C. ELEGANS:174165_AT
tggccgattgagtagaagctcacaattacaaatcaattatttcatttcaaatggatattg
ttaaataaacctccaatctccgcctccaatatctccagaatgtgccacgtcatcatcaat
gacgtcatcatcgccacacaattctacaggaaaatgcacaaaaatcccttgaaaaatgat
attttttgccccaataaattcgaaaattcccctctcctccccttttctctgaaaatttat
ttttttctaaaaaaaatttaatttcgatcatttttgaatagctttactcatttggatccc
aattttttccctttttccctttttttcccaaaaaattgactgaaatttgctgaaattcag
cgatttttgtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCGATTGAGTAGAAGCTCACAA 446 543 106 Antisense
GAAGCTCACAATTACAAATCAATTA 163 343 120 Antisense
AAATCAATTATTTCATTTCAAATGG 240 117 135 Antisense
TGTTAAATAAACCTCCAATCTCCGC 551 557 164 Antisense
CGCCTCCAATATCTCCAGAATGTGC 331 257 186 Antisense
TCATCGCCACACAATTCTACAGGAA 515 621 233 Antisense
GAAAATGCACAAAAATCCCTTGAAA 7 355 255 Antisense
GATATTTTTTGCCCCAATAAATTCG 515 425 283 Antisense
AATTTCGATCATTTTTGAATAGCTT 37 175 365 Antisense
TGAATAGCTTTACTCATTTGGATCC 571 575 380 Antisense
GCTGAAATTCAGCGATTTTTGTCAT 193 295 454 Antisense
Sequence Source Affymetrix Proprietary Database