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[174163_at]

Description CEC588_rc /REP_DB=TREMBL Accession /GB=C07588 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142h6 : 3prime end, single read.
Cluster 6grp_total > 46      4grp_total > 56      6grp_cgc > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 39.7
(1.8)
A 		9.9
(-3)
A 		47.2
(3)
A 		17.6
(-1.8)
A 		37
B 22.2
(-0.4)
A 		35.4
(3)
A 		29.3
(1.4)
A 		11.9
(-3)
A 		24
C 22.2
(-3)
A 		46.2
(1.3)
A 		32.8
(-1.1)
A 		55.4
(3)
A 		33
avr 28
(-3) 		30.5
(-1.2) 		36.4
(3) 		28.3
(-2.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 42.7
(3)
A 		19.8
(-0.8)
A 		31.4
(1.1)
A 		19.5
(-0.8)
A 		6.3
(-3)
A 		36.6
(2)
A 		36
B 25
(-0.9)
A 		21.6
(-1.5)
A 		26.6
(-0.6)
A 		45.4
(3)
A 		21.8
(-1.5)
A 		13.8
(-3)
A 		32
C 21.6
(-1.5)
A 		70.3
(3)
A 		5.6
(-3)
A 		22.4
(-1.4)
A 		24.6
(-1.2)
A 		48.8
(1)
A 		65
avr 29.8
(0.7) 		37.2
(3) 		21.2
(-1.9) 		29.1
(0.5) 		17.6
(-3) 		33.1
(1.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14.5
(3)
A 		2.2
(-3)
A 		12.3
(1.9)
A 		2.6
(-2.8)
A 		12
B 7.1
(1.5)
A 		8.7
(3)
A 		6.8
(1.2)
A 		2.5
(-3)
A 		6
C 7.4
(-3)
A 		13.3
(3)
A 		11.4
(1.1)
A 		9.3
(-1.1)
A 		6
avr 9.7
(2.4) 		8.1
(0.7) 		10.2
(3) 		4.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.9
(2.1)
A 		7
(1.4)
A 		6.8
(1.2)
A 		4.9
(-0.4)
A 		1.9
(-3)
A 		8.9
(3)
A 		7
B 8.7
(0.1)
A 		7.2
(-1.2)
A 		6.5
(-1.9)
A 		12
(3)
A 		8.9
(0.3)
A 		5.2
(-3)
A 		7
C 8
(-1)
A 		21.5
(3)
A 		1.4
(-3)
A 		4.5
(-2.1)
A 		8
(-1)
A 		16.3
(1.4)
A 		20
avr 8.2
(-0.2) 		11.9
(3) 		4.9
(-3) 		7.1
(-1.1) 		6.3
(-1.8) 		10.1
(1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20122
Sequence Type Exemplar sequence
Representative Public ID CEC588 NCBI
Target Description CEC588_rc /REP_DB=TREMBL Accession /GB=C07588 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC588
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC588 CEC588_rc /REP_DB=TREMBL Accession /GB=C07588 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142h6 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058506 11/11 Negative Strand Matching Probes A 
M01D7.6.1 11/11 Negative Strand Matching Probes A 
M01D7.6.2 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1842830-1843146(-) 87.4 100.0
Sequence
Target Sequence 
>C. ELEGANS:174163_AT
aaatagcgatttcaacagtcaaagaaaaaaatagaaatttaaaaaataatttaaatagta
tcctccggattcgtctcggccacgagcttcaactgctcggcgttctcgatcaagaagtag
gcgaagacggcgatgaagacgaagagaattgtgaatgtgcgtgcttcccaagaatcctcc
tttgttgctctgagcttgacgagccgatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAGCGATTTCAACAGTCAAAGA 378 115 22 Antisense
AAATAGTATCCTCCGGATTCGTCTC 95 117 74 Antisense
ACGAGCTTCAACTGCTCGGCGTTCT 103 93 103 Antisense
GCTCGGCGTTCTCGATCAAGAAGTA 366 299 116 Antisense
GGCGTTCTCGATCAAGAAGTAGGCG 463 539 120 Antisense
AGAAGTAGGCGAAGACGGCGATGAA 497 73 134 Antisense
GACGGCGATGAAGACGAAGAGAATT 385 375 147 Antisense
GAATTGTGAATGTGCGTGCTTCCCA 693 321 167 Antisense
ATTGTGAATGTGCGTGCTTCCCAAG 153 5 169 Antisense
GTTGCTCTGAGCTTGACGAGCCGAT 320 439 205 Antisense
GCTCTGAGCTTGACGAGCCGATGCC 568 299 208 Antisense
Sequence Source Affymetrix Proprietary Database