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[174161_at]

Description C31699_rc /REP_DB=TREMBL Accession /GB=C31699 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk290f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 76      6grp_total > 09      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 1336.1
(3)
P 		832.5
(-3)
P 		857.4
(-2.7)
P 		1076.1
(-0.1)
P 		504
B 1216.8
(3)
P 		1040.8
(-0.4)
P 		904.5
(-3)
P 		1128.1
(1.3)
P 		312
C 1289.7
(3)
P 		1011
(-1.3)
P 		899.7
(-3)
P 		1247.2
(2.3)
P 		390
avr 1280.9
(3) 		961.4
(-1.9) 		887.2
(-3) 		1150.5
(1) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 933
1 2 3 4 5 6 range
A 1868.6
(3)
P 		1246.5
(-1.3)
P 		1368
(-0.5)
P 		1234.6
(-1.4)
P 		1242.2
(-1.4)
P 		1005.1
(-3)
P 		864
B 1485.6
(2.3)
P 		1184.2
(-0.6)
P 		935.5
(-3)
P 		1557.4
(3)
P 		1018.4
(-2.2)
P 		1107.6
(-1.3)
P 		622
C 1132.2
(-0.4)
P 		1178.2
(0.2)
P 		1344
(2.5)
P 		1381.3
(3)
P 		946
(-3)
P 		953.7
(-2.9)
P 		435
avr 1495.5
(3) 		1203
(-0.7) 		1215.8
(-0.5) 		1391.1
(1.7) 		1068.9
(-2.4) 		1022.1
(-3) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 486.5
(3)
P 		180.7
(-2.6)
P 		224.1
(-1.8)
P 		157.5
(-3)
P 		329
B 388
(3)
P 		257
(-1.4)
P 		209.6
(-3)
P 		240.4
(-2)
P 		178
C 426.9
(3)
P 		290.7
(-0.8)
P 		313.6
(-0.1)
P 		210.3
(-3)
P 		217
avr 433.8
(3) 		242.8
(-2) 		249.1
(-1.8) 		202.7
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 344.5
(0)
P 		443.3
(3)
P 		297.9
(-1.4)
P 		313.1
(-0.9)
P 		374.9
(0.9)
P 		244.7
(-3)
P 		199
B 516.9
(3)
P 		394.2
(0.5)
P 		227.2
(-3)
P 		412.5
(0.8)
P 		413.8
(0.9)
P 		413
(0.8)
P 		290
C 419.7
(3)
P 		359.5
(0.5)
P 		342.1
(-0.3)
P 		277.8
(-3)
P 		306.1
(-1.8)
P 		319.3
(-1.2)
P 		142
avr 427
(3) 		399
(1.8) 		289.1
(-3) 		334.5
(-1) 		364.9
(0.3) 		325.7
(-1.4) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174161_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20527
Sequence Type Exemplar sequence
Representative Public ID C31699 NCBI
Target Description C31699_rc /REP_DB=TREMBL Accession /GB=C31699 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk290f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K04B12.2b.2 ENSEMBL cdna:known chromosome:CEL140:II:14434342:14437862:-1 gene:K04B12.2 11/11 A 
K04B12.2b.3 ENSEMBL cdna:known chromosome:CEL140:II:14434406:14437870:-1 gene:K04B12.2 11/11 None
K04B12.2b.4 ENSEMBL cdna:known chromosome:CEL140:II:14434477:14436616:-1 gene:K04B12.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14434412-14434695(-) 100.0 100.0
Public Domain and Genome References
Ensembl K04B12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05754 Hypothetical protein K04B12.2a [Caenorhabditis elegans] ref|NP_001022231.1| K04B12.2a [Caenorhabditis elegans] 0.0
blast CAE46672 Hypothetical protein K04B12.2b [Caenorhabditis elegans] ref|NP_001022232.1| K04B12.2b [Caenorhabditis elegans] 0.0
blast CAE57927 Hypothetical protein CBG00980 [Caenorhabditis briggsae] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:174161_AT
tcttctatcaaaatctctccctgtaattgtaagaaaaatttctgtgaaaaaaccccaaaa
aatctttcgaaaactttcaaacattcatcggttacttctattattgtcccttacctaatt
gtcctcaaattccctttcaaaaaggtcttttttctgtcgcctctactttttaaatttgtt
ctttttcctctctgattgtggcagcttttacaactgtcacaatttcctggccctgttcaa
tattttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTATCAAAATCTCTCCCTGTA 130 617 13 Antisense
CAAAATCTCTCCCTGTAATTGTAAG 152 191 21 Antisense
CAAACATTCATCGGTTACTTCTATT 375 191 90 Antisense
TACTTCTATTATTGTCCCTTACCTA 319 645 105 Antisense
TCCCTTACCTAATTGTCCTCAAATT 16 597 119 Antisense
TGTCCTCAAATTCCCTTTCAAAAAG 394 557 132 Antisense
TTCTGTCGCCTCTACTTTTTAAATT 444 693 164 Antisense
TTCTTTTTCCTCTCTGATTGTGGCA 262 691 191 Antisense
GATTGTGGCAGCTTTTACAACTGTC 284 435 206 Antisense
TTACAACTGTCACAATTTCCTGGCC 171 683 220 Antisense
TTCCTGGCCCTGTTCAATATTTTGA 211 699 236 Antisense
Sequence Source Affymetrix Proprietary Database