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[174160_at]

Description C54848_rc /REP_DB=TREMBL Accession /GB=C54848 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk408d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 77      6grp_total > 56      4grp_total > 20      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 699
1 2 3 4 range
A 1242.2
(0.6)
P 		1134.9
(-1.4)
P 		1050.5
(-3)
P 		1367.4
(3)
P 		317
B 1266.5
(-0.1)
P 		1092.8
(-1.8)
P 		961.3
(-3)
P 		1596.2
(3)
P 		635
C 1116.1
(-0.3)
P 		1061.8
(-1)
P 		897.4
(-3)
P 		1379
(3)
P 		482
avr 1208.3
(-0) 		1096.5
(-1.4) 		969.7
(-3) 		1447.5
(3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 828
1 2 3 4 5 6 range
A 1188.5
(-2.7)
P 		1644
(2.8)
P 		1164.9
(-3)
P 		1166.8
(-3)
P 		1447.4
(0.4)
P 		1660.2
(3)
P 		495
B 1498.1
(0.5)
P 		1470.9
(0.2)
P 		1501.3
(0.5)
P 		1257.9
(-2)
P 		1156.5
(-3)
P 		1746.8
(3)
P 		590
C 1323.1
(0.2)
P 		1454.2
(1.2)
P 		1301.9
(0)
P 		918.5
(-3)
P 		1075.2
(-1.8)
P 		1677.3
(3)
P 		759
avr 1336.6
(-0.7) 		1523
(1.2) 		1322.7
(-0.8) 		1114.4
(-3) 		1226.4
(-1.8) 		1694.8
(3) 		580
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 452.3
(3)
P 		246.3
(-1.9)
P 		274.6
(-1.2)
P 		200.2
(-3)
P 		252
B 403.9
(3)
P 		269.9
(-1.4)
P 		222.8
(-3)
P 		340.1
(0.9)
P 		181
C 369.5
(3)
P 		305.3
(0.2)
P 		312.8
(0.5)
P 		232.5
(-3)
P 		137
avr 408.6
(3) 		273.8
(-2.4) 		270.1
(-2.5) 		257.6
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 219.1
(-3)
P 		584.7
(3)
P 		253.7
(-2.4)
P 		295.9
(-1.7)
P 		436.8
(0.6)
P 		404.2
(0)
P 		366
B 521.2
(0.5)
P 		489.6
(-0.1)
P 		364.5
(-2.4)
P 		333.2
(-3)
P 		469.9
(-0.4)
P 		651.4
(3)
P 		318
C 490.4
(1.9)
P 		443.7
(1.1)
P 		331.3
(-0.7)
P 		184.7
(-3)
P 		347.9
(-0.4)
P 		561.5
(3)
P 		377
avr 410.2
(0.1) 		506
(2.3) 		316.5
(-2) 		271.3
(-3) 		418.2
(0.3) 		539
(3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20731
Sequence Type Exemplar sequence
Representative Public ID C54848 NCBI
Target Description C54848_rc /REP_DB=TREMBL Accession /GB=C54848 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk408d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026935 NCBI Caenorhabditis elegans F22D3.2a (F22D3.2) mRNA, complete cds. 11/11 None
F22D3.2a ENSEMBL cdna:known chromosome:CEL140:II:6928699:6947815:1 gene:F22D3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174134 3 1 NM_001026935 174160_at (11), 175044_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6947470-6947755(+) 100.0 100.0
Public Domain and Genome References
Ensembl F22D3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31497 Hypothetical protein F22D3.2a [Caenorhabditis elegans] ref|NP_001022106.1| F22D3.2a [Caenorhabditis elegans] 0.0
blast AAT81196 Hypothetical protein F22D3.2b [Caenorhabditis elegans] ref|NP_001022107.1| F22D3.2b [Caenorhabditis elegans] 0.0
blast AAV58873 Hypothetical protein F22D3.2c [Caenorhabditis elegans] ref|NP_001022108.1| F22D3.2c [Caenorhabditis elegans] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:174160_AT
tatgcccccggagggttcataaaatctccatttgttttaataggcatcggtgatattcat
gtactattcgccgcgttacacaatcgagctttttcacccacaataccatctctaaataag
catctcttctctccacaccgtccaatcattttctctatatattgacgcgaaaatctcttt
ctcatcctttttgtcgtttctttcccattgctttgtctgtttcattcattcacgatggcg
tat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCCCCCGGAGGGTTCATAAAAT 630 649 21 Antisense
GGGTTCATAAAATCTCCATTTGTTT 221 497 33 Antisense
CCATTTGTTTTAATAGGCATCGGTG 391 269 48 Antisense
GTGATATTCATGTACTATTCGCCGC 96 485 70 Antisense
TATTCGCCGCGTTACACAATCGAGC 577 663 85 Antisense
TCACCCACAATACCATCTCTAAATA 11 627 114 Antisense
CTAAATAAGCATCTCTTCTCTCCAC 605 225 132 Antisense
ACCGTCCAATCATTTTCTCTATATA 358 89 157 Antisense
GACGCGAAAATCTCTTTCTCATCCT 190 381 184 Antisense
CCATTGCTTTGTCTGTTTCATTCAT 184 271 225 Antisense
GTTTCATTCATTCACGATGGCGTAT 32 451 239 Antisense
Sequence Source Affymetrix Proprietary Database