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[174158_at]

Description C55136_rc /REP_DB=TREMBL Accession /GB=C55136 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk429f7 : 3prime end, single read.
Cluster 6grp_total > 06      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.7
(-2.8)
A 		15.9
(3)
A 		1.3
(-3)
A 		7.5
(-0.5)
A 		15
B 1.6
(-3)
A 		3.7
(0.4)
A 		1.7
(-2.8)
A 		5.3
(3)
A 		4
C 2.3
(-2.4)
A 		6.5
(-0.6)
A 		1
(-3)
A 		14.7
(3)
A 		14
avr 1.9
(-2.5) 		8.7
(2.6) 		1.3
(-3) 		9.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 30
(3)
A 		5
(-2.2)
A 		7.6
(-1.7)
A 		1.8
(-2.9)
A 		3.1
(-2.6)
A 		1.2
(-3)
A 		29
B 5.6
(3)
A 		1.2
(-3)
A 		2.5
(-1.2)
A 		1.8
(-2.2)
A 		4.8
(1.9)
A 		1.9
(-2)
A 		4
C 1.6
(-2.8)
A 		16.3
(3)
A 		2.5
(-2.4)
A 		4.7
(-1.5)
A 		1
(-3)
A 		1.2
(-2.9)
A 		15
avr 12.4
(3) 		7.5
(0.3) 		4.2
(-1.5) 		2.8
(-2.2) 		3
(-2.1) 		1.4
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.6
(-2.4)
A 		3.5
(3)
A 		0.3
(-3)
A 		1.1
(-1.5)
A 		3
B 0.5
(-2.1)
A 		0.9
(1.3)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
C 0.7
(-1.9)
A 		1.9
(1.4)
A 		0.3
(-3)
A 		2.5
(3)
A 		2
avr 0.6
(-2) 		2.1
(3) 		0.3
(-3) 		1.6
(1.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.5
(3)
A 		1.8
(-1.3)
A 		1.7
(-1.4)
A 		0.4
(-2.9)
A 		0.9
(-2.3)
A 		0.3
(-3)
A 		5
B 1.9
(3)
A 		0.4
(-3)
A 		0.6
(-2.2)
A 		0.5
(-2.6)
A 		1.9
(3)
A 		0.7
(-1.8)
A 		2
C 0.6
(-2.6)
A 		5
(3)
A 		0.6
(-2.6)
A 		1
(-2.1)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		5
avr 2.7
(3) 		2.4
(2.2) 		1
(-1.6) 		0.6
(-2.7) 		1
(-1.6) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20173
Sequence Type Exemplar sequence
Representative Public ID C55136 NCBI
Target Description C55136_rc /REP_DB=TREMBL Accession /GB=C55136 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk429f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C55136
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55136 C55136_rc /REP_DB=TREMBL Accession /GB=C55136 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk429f7 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9939057-9939337(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174158_AT
ttcgcagcttttccgtacggatgcttcttctctccttctccaacatttccagcaaagttc
ttcatacttttcagcaaatcaagactgttttcatacagaataccagcatcatctgccatt
gtaagaatctcctcttcaaattctccacgatctctgagaaattaaagagaattttggaaa
ctttcggatctctcgacaaactcacttcaaccatttgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCAGCTTTTCCGTACGGATGCT 265 697 39 Antisense
CTTTTCCGTACGGATGCTTCTTCTC 78 223 46 Antisense
CATTTCCAGCAAAGTTCTTCATACT 369 215 82 Antisense
TTCTTCATACTTTTCAGCAAATCAA 280 689 96 Antisense
AGCAAATCAAGACTGTTTTCATACA 153 77 111 Antisense
GAATACCAGCATCATCTGCCATTGT 327 327 136 Antisense
GCCATTGTAAGAATCTCCTCTTCAA 230 281 153 Antisense
TTCTCCACGATCTCTGAGAAATTAA 627 691 179 Antisense
TGGAAACTTTCGGATCTCTCGACAA 609 547 213 Antisense
TCGGATCTCTCGACAAACTCACTTC 528 605 222 Antisense
CAAACTCACTTCAACCATTTGTTTC 566 191 235 Antisense
Sequence Source Affymetrix Proprietary Database