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[174157_at]

Description CEC805_rc /REP_DB=TREMBL Accession /GB=C07805 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk166f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 20      6grp_total > 17      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 561
1 2 3 4 range
A 1347.4
(3)
P 		824.6
(-2.6)
P 		786.6
(-3)
P 		872.4
(-2.1)
P 		561
B 1276.9
(3)
P 		1107
(0.9)
P 		793.3
(-3)
P 		1264.2
(2.8)
P 		484
C 1321.8
(3)
P 		1023.9
(-1.1)
P 		967.6
(-1.9)
P 		890.5
(-3)
P 		431
avr 1315.4
(3) 		985.2
(-1.2) 		849.2
(-3) 		1009
(-0.9) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1494
1 2 3 4 5 6 range
A 1544.3
(3)
P 		945.7
(-0.8)
P 		856.5
(-1.4)
P 		602.7
(-3)
P 		1000
(-0.5)
P 		760.5
(-2)
P 		942
B 2081.6
(3)
P 		1615.9
(1)
P 		1194.3
(-0.8)
P 		905.6
(-2)
P 		665.1
(-3)
P 		970
(-1.7)
P 		1417
C 1542
(3)
P 		1309
(1.5)
P 		588
(-3)
P 		626.9
(-2.8)
P 		812.5
(-1.6)
P 		903.4
(-1)
P 		954
avr 1722.6
(3) 		1290.2
(0.4) 		879.6
(-2) 		711.7
(-3) 		825.9
(-2.3) 		878
(-2) 		1011
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 490.6
(3)
P 		179
(-2.2)
P 		205.6
(-1.7)
P 		127.7
(-3)
P 		363
B 407.2
(3)
P 		273.4
(-0.6)
P 		183.8
(-3)
P 		269.4
(-0.7)
P 		223
C 437.6
(3)
P 		294.4
(0)
P 		337.3
(0.9)
P 		150.2
(-3)
P 		287
avr 445.1
(3) 		248.9
(-1.5) 		242.2
(-1.6) 		182.4
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 598
1 2 3 4 5 6 range
A 284.7
(1.3)
P 		336.4
(3)
P 		186.5
(-1.9)
P 		152.9
(-3)
P 		301.7
(1.9)
P 		185.2
(-1.9)
P 		184
B 724.3
(3)
P 		537.9
(0.7)
P 		290
(-2.4)
P 		239.9
(-3)
P 		270.2
(-2.6)
P 		361.7
(-1.5)
P 		484
C 571.6
(3)
P 		399.4
(0.7)
P 		149.7
(-2.7)
P 		126.1
(-3)
P 		262.9
(-1.2)
P 		302.4
(-0.6)
P 		446
avr 526.9
(3) 		424.6
(1.3) 		208.7
(-2.4) 		173
(-3) 		278.3
(-1.2) 		283.1
(-1.1) 		354
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20862
Sequence Type Exemplar sequence
Representative Public ID CEC805 NCBI
Target Description CEC805_rc /REP_DB=TREMBL Accession /GB=C07805 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk166f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062300 NCBI Caenorhabditis elegans Signal Element on Autosome family member (sea-2) (sea-2) mRNA, complete cds. 11/11 None
K10G6.3 ENSEMBL cdna:known chromosome:CEL140:II:3962217:3972128:1 gene:K10G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3971766-3972062(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sea-2
Ensembl K10G6.3
Entrez Gene 173738 Entrez gene
SwissProt O16625 EMBL-EBI
WormBase CE32201 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494701 Signal Element on Autosome family member (sea-2) [Caenorhabditis elegans] gb|AAB66098.3| Signal element on autosome protein 2 [Caenorhabditis elegans] 0.0
blast CAE71516 Hypothetical protein CBG18450 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:174157_AT
aaggatactctaatacacattttttgtgcagcgatttacaaaacaaatgggtcgattttt
ctcgaattttttcccccaattctctgatattgtgattgatctctttcttccccccctttt
cataccccccactcgctagtttcagatgcgttattataggtacgaagcctctctcatccc
ggacgcccacctctccttacctttagaatccaatatgtgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATACTCTAATACACATTTTTT 258 161 53 Antisense
CACATTTTTTGTGCAGCGATTTACA 697 195 68 Antisense
CAAATGGGTCGATTTTTCTCGAATT 680 191 96 Antisense
TTTTTCCCCCAATTCTCTGATATTG 335 675 120 Antisense
TATTGTGATTGATCTCTTTCTTCCC 679 665 140 Antisense
CCCCCACTCGCTAGTTTCAGATGCG 302 261 178 Antisense
CACTCGCTAGTTTCAGATGCGTTAT 559 197 182 Antisense
GTTTCAGATGCGTTATTATAGGTAC 635 445 191 Antisense
TATAGGTACGAAGCCTCTCTCATCC 324 657 207 Antisense
CCTCTCCTTACCTTTAGAATCCAAT 384 267 242 Antisense
ACCTTTAGAATCCAATATGTGTCGA 549 87 251 Antisense
Sequence Source Affymetrix Proprietary Database