[Home] | [Total List]

[174155_s_at]

Description CEC280_rc /REP_DB=TREMBL Accession /GB=C07280 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk118h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 95      6grp_total > 87      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 498.5
(3)
P 		458.8
(0.9)
P 		455.7
(0.7)
P 		387.1
(-3)
P 		111
B 479.4
(-2.7)
P 		470.1
(-3)
P 		475.6
(-2.8)
P 		683
(3)
P 		213
C 528.3
(0.3)
P 		473.3
(-3)
P 		474.8
(-2.9)
P 		573.8
(3)
P 		101
avr 502.1
(-0.4) 		467.4
(-3) 		468.7
(-2.9) 		548
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1101
1 2 3 4 5 6 range
A 404.8
(-2.9)
P 		399.7
(-3)
P 		396.3
(-3)
P 		475
(-2.2)
P 		725.8
(0.5)
P 		967.7
(3)
P 		571
B 451.4
(-2.5)
P 		380.2
(-3)
P 		527.1
(-2.1)
P 		522.3
(-2.1)
P 		793.9
(-0.4)
P 		1326.4
(3)
P 		946
C 431.2
(-2.3)
P 		400.1
(-2.5)
P 		309.5
(-3)
P 		505
(-1.9)
P 		695.6
(-0.9)
P 		1410.3
(3)
P 		1101
avr 429.1
(-2.7) 		393.3
(-3) 		411
(-2.9) 		500.8
(-2.2) 		738.4
(-0.5) 		1234.8
(3) 		842
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 181.5
(3)
P 		99.6
(-0.9)
P 		119.1
(-0)
P 		56.7
(-3)
P 		125
B 152.9
(3)
P 		116.1
(-2.2)
P 		110.2
(-3)
P 		145.5
(2)
P 		43
C 174.9
(3)
P 		136.1
(0)
P 		165.5
(2.3)
P 		96.8
(-3)
P 		78
avr 169.8
(3) 		117.3
(-1.5) 		131.6
(-0.3) 		99.7
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 74.6
(-3)
P 		142.1
(-0.5)
P 		86.3
(-2.6)
P 		120.5
(-1.3)
P 		219
(2.4)
P 		235.6
(3)
P 		161
B 157.1
(-2.5)
P 		126.5
(-3)
P 		128
(-3)
P 		138.3
(-2.8)
P 		322.5
(0.2)
P 		494.6
(3)
P 		368
C 159.8
(-1.8)
P 		122.1
(-2.3)
P 		78.8
(-3)
P 		101.6
(-2.7)
P 		225.1
(-0.8)
P 		472.1
(3)
P 		393
avr 130.5
(-2.4) 		130.2
(-2.4) 		97.7
(-3) 		120.1
(-2.6) 		255.5
(0.1) 		400.8
(3) 		303
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174155_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21690
Sequence Type Exemplar sequence
Representative Public ID CEC280 NCBI
Target Description CEC280_rc /REP_DB=TREMBL Accession /GB=C07280 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk118h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171501 NCBI Caenorhabditis elegans C24B5.2a (ATPase) mRNA, complete cds. 11/11 A 
SNAP00000040463 ENSEMBL cdna:SNAP chromosome:CEL140:V:9178388:9180417:1 11/11 None
GENEFINDER00000040469 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9176674:9180417:1 11/11 None
C24B5.2a ENSEMBL cdna:known chromosome:CEL140:V:9178383:9180571:1 gene:C24B5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179300 2 1 NM_171501 174154_at (11), 174155_s_at (11), 188136_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9180174-9180556(+) 100.0 100.0
Public Domain and Genome References
Ensembl C24B5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29664 Hypothetical protein C24B5.2a [Caenorhabditis elegans] ref|NP_741586.1| C24B5.2a [Caenorhabditis elegans] 0.0
blast CAE72124 Hypothetical protein CBG19220 [Caenorhabditis briggsae] 0.0
blast AAD31546 Prion-like-(q/n-rich)-domain-bearing protein protein 16 [Caenorhabditis elegans] ref|NP_505378.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-16) [Caenorhabditis elegans] 9.0E-96
blast AAQ74774 spastin [Danio rerio] 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 8.5E-70
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 8.5E-70
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 2.1E-37
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 8.5E-70
Sequence
Target Sequence 
>C. ELEGANS:174155_S_AT
gaagctgcaatggttccgattcgtgaaatcgacagatcgaagcttagcatgactgacgga
gaaaaaatacgcatcagacttcgatacagcattgcgcacaatcagaccatcgacttctca
gaaaatcatgtcaaaactctccgatttctctcgaagtttcggttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGCAATGGTTCCGATTCGTG 503 343 31 Antisense
GGTTCCGATTCGTGAAATCGACAGA 376 501 42 Antisense
TCGACAGATCGAAGCTTAGCATGAC 70 601 59 Antisense
GAAGCTTAGCATGACTGACGGAGAA 12 343 69 Antisense
AGACTTCGATACAGCATTGCGCACA 357 71 106 Antisense
ATTGCGCACAATCAGACCATCGACT 697 5 121 Antisense
ACAATCAGACCATCGACTTCTCAGA 632 113 128 Antisense
GACCATCGACTTCTCAGAAAATCAT 606 383 135 Antisense
GAAAATCATGTCAAAACTCTCCGAT 484 353 151 Antisense
AAAACTCTCCGATTTCTCTCGAAGT 362 131 163 Antisense
GATTTCTCTCGAAGTTTCGGTTGCT 606 427 173 Antisense
Sequence Source Affymetrix Proprietary Database