[Home] | [Total List]

[174154_at]

Description CEC280_rc /REP_DB=TREMBL Accession /GB=C07280 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk118h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 98      6grp_total > 87      4grp_total > 14      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 1001.7
(2.6)
P 		853.8
(-1.4)
P 		797.7
(-3)
P 		1014.8
(3)
P 		217
B 1005.1
(0.4)
P 		802.8
(-3)
P 		910.1
(-1.2)
P 		1164.2
(3)
P 		361
C 1165.9
(3)
P 		711.8
(-3)
P 		752.8
(-2.5)
P 		1083.6
(1.9)
P 		454
avr 1057.6
(2.4) 		789.5
(-3) 		820.2
(-2.4) 		1087.5
(3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1622
1 2 3 4 5 6 range
A 861.3
(-2.1)
P 		677.1
(-3)
P 		766.9
(-2.6)
P 		813.2
(-2.3)
P 		1680.6
(1.9)
P 		1893.6
(3)
P 		1217
B 649
(-3)
P 		642.5
(-3)
P 		727.4
(-2.6)
P 		1041.8
(-1.3)
P 		1212.2
(-0.6)
P 		2051.4
(3)
P 		1409
C 714.7
(-3)
P 		735.8
(-2.9)
P 		790
(-2.7)
P 		851.7
(-2.5)
P 		1079.1
(-1.6)
P 		2264.7
(3)
P 		1550
avr 741.7
(-2.8) 		685.1
(-3) 		761.4
(-2.7) 		902.2
(-2.1) 		1324
(-0.2) 		2069.9
(3) 		1385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 364.7
(3)
P 		185.3
(-2)
P 		208.5
(-1.3)
P 		148.5
(-3)
P 		216
B 320.5
(3)
P 		198.3
(-3)
P 		210.9
(-2.4)
P 		248.1
(-0.6)
P 		122
C 385.9
(3)
P 		204.6
(-2.4)
P 		262.4
(-0.6)
P 		182.7
(-3)
P 		203
avr 357
(3) 		196.1
(-2.9) 		227.3
(-1.7) 		193.1
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 158.8
(-3)
P 		240.8
(-1.6)
P 		167
(-2.9)
P 		206.3
(-2.2)
P 		507.1
(3)
P 		461
(2.2)
P 		348
B 225.8
(-2.5)
P 		213.9
(-2.6)
P 		176.6
(-3)
P 		275.9
(-2)
P 		492.5
(0.2)
P 		764.9
(3)
P 		588
C 264.9
(-2)
P 		224.5
(-2.5)
P 		201.1
(-2.7)
P 		171.3
(-3)
P 		349.2
(-1.2)
P 		758.1
(3)
P 		587
avr 216.5
(-2.6) 		226.4
(-2.4) 		181.6
(-3) 		217.8
(-2.5) 		449.6
(0.4) 		661.3
(3) 		480
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21690
Sequence Type Exemplar sequence
Representative Public ID CEC280 NCBI
Target Description CEC280_rc /REP_DB=TREMBL Accession /GB=C07280 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk118h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171501 NCBI Caenorhabditis elegans C24B5.2a (ATPase) mRNA, complete cds. 11/11 None
C24B5.2a ENSEMBL cdna:known chromosome:CEL140:V:9178383:9180571:1 gene:C24B5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179300 2 1 NM_171501 174154_at (11), 174155_s_at (11), 188136_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9180174-9180556(+) 100.0 100.0
Public Domain and Genome References
Ensembl C24B5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29664 Hypothetical protein C24B5.2a [Caenorhabditis elegans] ref|NP_741586.1| C24B5.2a [Caenorhabditis elegans] 0.0
blast CAE72124 Hypothetical protein CBG19220 [Caenorhabditis briggsae] 0.0
blast NP_058658 spastic paraplegia 4 homolog [Mus musculus] gb|AAH46286.1| Spastic paraplegia 4 homolog [Mus musculus] 8.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 8.5E-70
Sequence
Target Sequence 
>C. ELEGANS:174154_AT
agtttcggttgctaactgatccttcacgagtaccttttcacattacgcacgtttctgtac
aaacattttgtatcactatcaagttcctatcacagatctctagttgttttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTCGGTTGCTAACTGATCCTTC 190 63 185 Antisense
GTTGCTAACTGATCCTTCACGAGTA 243 439 192 Antisense
TAACTGATCCTTCACGAGTACCTTT 498 637 197 Antisense
CCTTCACGAGTACCTTTTCACATTA 448 269 205 Antisense
ACGAGTACCTTTTCACATTACGCAC 616 93 210 Antisense
TTCACATTACGCACGTTTCTGTACA 317 687 221 Antisense
GCACGTTTCTGTACAAACATTTTGT 252 315 231 Antisense
ACATTTTGTATCACTATCAAGTTCC 107 105 247 Antisense
ATCAAGTTCCTATCACAGATCTCTA 278 27 262 Antisense
GTTCCTATCACAGATCTCTAGTTGT 502 441 267 Antisense
ATCACAGATCTCTAGTTGTTTTTTT 527 27 273 Antisense
Sequence Source Affymetrix Proprietary Database