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[174153_at]

Description C58915_rc /REP_DB=TREMBL Accession /GB=C58915 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk383e1 : 3prime end, single read.
Cluster 6grp_total > 07      4grp_total > 13      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 71.9
(-0.5)
P 		36.3
(-3)
A 		40.5
(-2.7)
A 		120.1
(3)
P 		84
B 79.8
(1.9)
P 		45.1
(-0.8)
A 		16.2
(-3)
A 		94.7
(3)
P 		79
C 69
(0.4)
P 		43.1
(-2.3)
A 		36.1
(-3)
A 		93.5
(3)
A 		57
avr 73.6
(0.6) 		41.5
(-2.1) 		30.9
(-3) 		102.8
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 109.6
(3)
M 		35.9
(-2.1)
M 		70.5
(0.3)
P 		46
(-1.4)
P 		41.8
(-1.7)
A 		22.4
(-3)
A 		87
B 99.1
(3)
P 		72.1
(0.5)
P 		65.3
(-0.2)
M 		35.1
(-3)
A 		45.6
(-2)
P 		62.8
(-0.4)
M 		64
C 82
(3)
P 		62.9
(1)
P 		54.3
(0.1)
A 		73.5
(2.1)
P 		37
(-1.6)
A 		23.9
(-3)
A 		58
avr 96.9
(3) 		57
(-1) 		63.4
(-0.3) 		51.5
(-1.5) 		41.5
(-2.5) 		36.4
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.2
(3)
P 		7.9
(-3)
A 		10.6
(-2.1)
A 		17.6
(0.2)
P 		18
B 25.4
(3)
P 		11.1
(-1)
A 		3.7
(-3)
A 		20.2
(1.6)
P 		22
C 22.8
(3)
P 		12.4
(-3)
A 		12.6
(-2.9)
A 		15.8
(-1)
A 		10
avr 24.8
(3) 		10.5
(-2.4) 		9
(-3) 		17.9
(0.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 20.2
(3)
M 		12.8
(0)
M 		15.4
(1.1)
P 		11.7
(-0.4)
P 		12.6
(-0.1)
A 		5.4
(-3)
A 		15
B 34.5
(3)
P 		24
(0.5)
P 		15.9
(-1.4)
M 		9.3
(-3)
A 		18.5
(-0.8)
P 		23.4
(0.4)
M 		25
C 30.4
(3)
P 		19.2
(-0)
P 		13.8
(-1.4)
A 		14.8
(-1.2)
P 		12
(-1.9)
A 		8
(-3)
A 		22
avr 28.4
(3) 		18.7
(-0.5) 		15
(-1.9) 		11.9
(-3) 		14.4
(-2.1) 		12.3
(-2.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20118
Sequence Type Exemplar sequence
Representative Public ID C58915 NCBI
Target Description C58915_rc /REP_DB=TREMBL Accession /GB=C58915 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk383e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058582(11), NM_182064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058582 NCBI Caenorhabditis elegans INneXin family member (inx-19) (inx-19) mRNA, complete cds. 11/11 A 
NM_182064 NCBI Caenorhabditis elegans INneXin family member (inx-19) (inx-19) mRNA, complete cds. 11/11 A 
SNAP00000044264 ENSEMBL cdna:SNAP chromosome:CEL140:I:2451975:2456445:-1 11/11 None
GENEFINDER00000044265 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2451975:2456464:-1 11/11 None
T16H5.1a ENSEMBL cdna:known chromosome:CEL140:I:2451909:2463462:-1 gene:T16H5.1 11/11 A 
T16H5.1b ENSEMBL cdna:known chromosome:CEL140:I:2451975:2464638:-1 gene:T16H5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018139 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2451990-2453034(-) 100.0 100.0
Public Domain and Genome References
Ensembl T16H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM45360 Innexin protein 19, isoform a [Caenorhabditis elegans] ref|NP_490983.2| INneXin family member (inx-19) [Caenorhabditis elegans] 0.0
blast AAO21399 Innexin protein 19, isoform b [Caenorhabditis elegans] ref|NP_871864.1| INneXin family member (inx-19) [Caenorhabditis elegans] 0.0
blast T33045 hypothetical protein T16H5.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490983.2 1 302-324
NP_871864.1 1 286-308
T16H5.1a 1 302-324
T16H5.1b 1 286-308
SNAP00000044264 1 286-308
GENEFINDER00000044265 1 293-315
Sequence
Target Sequence 
>C. ELEGANS:174153_AT
atctgatggggtcctaatgctccgaatgatctccaatcacgctggagatatgattgtcgt
gcagcttgtcagaaatctgtggcaagagttccgagagcgaaattggcgggaattcgaaga
gcacgaggagatgaaggatgtcgagatgcgacggatacatggagggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGATGGGGTCCTAATGCTCCGA 319 33 95 Antisense
TCCTAATGCTCCGAATGATCTCCAA 219 593 106 Antisense
TGCTCCGAATGATCTCCAATCACGC 677 579 112 Antisense
CCGAATGATCTCCAATCACGCTGGA 167 263 116 Antisense
GGAGATATGATTGTCGTGCAGCTTG 127 517 138 Antisense
GATTGTCGTGCAGCTTGTCAGAAAT 661 433 146 Antisense
GCAGCTTGTCAGAAATCTGTGGCAA 668 313 155 Antisense
TCTGTGGCAAGAGTTCCGAGAGCGA 630 607 170 Antisense
CCGAGAGCGAAATTGGCGGGAATTC 648 259 185 Antisense
AAGGATGTCGAGATGCGACGGATAC 484 159 228 Antisense
GAGATGCGACGGATACATGGAGGGG 404 395 237 Antisense
Sequence Source Affymetrix Proprietary Database