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[174150_at]

Description C55307_rc /REP_DB=TREMBL Accession /GB=C55307 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk405h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 29      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 83      6grp_total > 27      4grp_total > 63      6grp_highest_sub > De      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 365.5
(-3)
P 		367.8
(-2.8)
P 		431.1
(3)
P 		399.7
(0.1)
P 		66
B 565.7
(3)
P 		462.1
(-2)
P 		441.6
(-3)
P 		496.4
(-0.4)
P 		124
C 565
(2.3)
P 		423.2
(-2)
P 		587.6
(3)
P 		390.2
(-3)
P 		197
avr 498.7
(3) 		417.7
(-3) 		486.8
(2.1) 		428.8
(-2.2) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 618
(3)
P 		510.8
(0.6)
P 		413.6
(-1.6)
P 		353.2
(-3)
P 		614
(2.9)
P 		426.2
(-1.3)
P 		265
B 514.3
(2.1)
P 		497.3
(1.6)
P 		339
(-3)
P 		460
(0.6)
P 		409.7
(-0.9)
P 		543.3
(3)
P 		204
C 551
(2.6)
P 		561.6
(2.9)
P 		564.4
(3)
P 		489.2
(0.6)
P 		372.5
(-3)
P 		507.9
(1.2)
P 		192
avr 561.1
(3) 		523.2
(1.2) 		439
(-2.8) 		434.1
(-3) 		465.4
(-1.5) 		492.5
(-0.2) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 133.1
(3)
P 		79.8
(-1.3)
P 		112.7
(1.4)
P 		58.5
(-3)
P 		75
B 180.4
(3)
P 		114.1
(-2.1)
P 		102.3
(-3)
P 		105.8
(-2.7)
P 		78
C 187
(2.2)
P 		121.7
(-0.6)
P 		204.8
(3)
P 		65.8
(-3)
P 		139
avr 166.8
(3) 		105.2
(-1.1) 		139.9
(1.2) 		76.7
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 113.9
(-1.5)
P 		181.7
(2.8)
P 		90.1
(-3)
P 		89.6
(-3)
P 		185.3
(3)
P 		103.8
(-2.1)
P 		96
B 178.9
(1.8)
P 		165.5
(1.1)
P 		82.3
(-3)
P 		121.8
(-1)
P 		166.5
(1.2)
P 		202.6
(3)
P 		120
C 204.2
(3)
P 		171.4
(1.1)
P 		143.6
(-0.4)
P 		98.4
(-3)
P 		120.5
(-1.7)
P 		170
(1.1)
P 		106
avr 165.7
(2.4) 		172.9
(3) 		105.3
(-2.8) 		103.3
(-3) 		157.4
(1.7) 		158.8
(1.8) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22154
Sequence Type Exemplar sequence
Representative Public ID C55307 NCBI
Target Description C55307_rc /REP_DB=TREMBL Accession /GB=C55307 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk405h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076695 NCBI Caenorhabditis elegans Cation Diffusion Facilitator family member (cdf-1) (cdf-1) mRNA, complete cds. 11/11 None
C15B12.7b ENSEMBL cdna:known chromosome:CEL140:X:6499892:6504557:-1 gene:C15B12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180923 2 1 NM_076695 174150_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6499934-6500238(-) 100.0 100.0
Public Domain and Genome References
Ensembl C15B12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL13323 Cation diffusion facilitator family protein 1, isoform b [Caenorhabditis elegans] ref|NP_509096.1| Cation Diffusion Facilitator family member (cdf-1) [Caenorhabditis elegans] 0.0
blast AAK39165 Cation diffusion facilitator family protein 1, isoform a [Caenorhabditis elegans] ref|NP_509095.1| Cation Diffusion Facilitator family member (cdf-1) [Caenorhabditis elegans] 0.0
blast T15506 hypothetical protein C15B12.7 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 4.8E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509096.1 6 117-139,143-160,180-202,212-234,387-409,419-441
C15B12.7b 6 117-139,143-160,180-202,212-234,387-409,419-441
Sequence
Target Sequence 
>C. ELEGANS:174150_AT
tcgcgggccgaaaataccaacattaaaatgtactttttcttctccttgaaactatgtttt
tgcatttgatcgttttagcatctcaacatctactcacctttcttagtttccttcattaac
cgtataattttttccacaatctggtcaaaaactcgtcaaactatttaatttatacgtgtc
aatccatttccccacccccatttactgaagtgtccttactttgtgtctaccaattttcac
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCGGGCCGAAAATACCAACATTA 655 585 46 Antisense
TACTTTTTCTTCTCCTTGAAACTAT 675 609 76 Antisense
GATCGTTTTAGCATCTCAACATCTA 335 417 113 Antisense
AACATCTACTCACCTTTCTTAGTTT 395 133 130 Antisense
TCTTAGTTTCCTTCATTAACCGTAT 679 613 146 Antisense
ACCGTATAATTTTTTCCACAATCTG 356 89 164 Antisense
ATCTGGTCAAAAACTCGTCAAACTA 641 33 184 Antisense
ATTTATACGTGTCAATCCATTTCCC 461 13 213 Antisense
CCACCCCCATTTACTGAAGTGTCCT 433 273 237 Antisense
GAAGTGTCCTTACTTTGTGTCTACC 552 335 252 Antisense
TACTTTGTGTCTACCAATTTTCACT 597 645 262 Antisense
Sequence Source Affymetrix Proprietary Database