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[174149_at]

Description C35102_rc /REP_DB=TREMBL Accession /GB=C35102 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk423g5 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 2.8
(-2.9)
A 		3.9
(-2.8)
A 		2.3
(-3)
A 		51
(3)
A 		49
B 2.3
(-3)
A 		25
(3)
A 		5.3
(-2.2)
A 		4.5
(-2.4)
A 		23
C 2
(-3)
A 		3.2
(-2.9)
A 		15.9
(-1.5)
A 		59.1
(3)
A 		57
avr 2.4
(-3) 		10.7
(-1.6) 		7.8
(-2.1) 		38.2
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 2.4
(-3)
A 		5.5
(-2.9)
A 		4.6
(-2.9)
A 		30.3
(-1.8)
A 		110
(1.6)
M 		143.1
(3)
P 		141
B 2.1
(-3)
A 		11
(-2.7)
A 		5
(-2.9)
A 		16.9
(-2.5)
A 		134.5
(1.7)
P 		171.8
(3)
P 		170
C 3.9
(-3)
A 		38.7
(-1.6)
A 		3.8
(-3)
A 		53.8
(-1)
A 		99.8
(0.9)
P 		150.9
(3)
P 		147
avr 2.8
(-3) 		18.4
(-2.4) 		4.5
(-2.9) 		33.7
(-1.8) 		114.8
(1.4) 		155.3
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(-2.7)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		7.5
(3)
A 		7
B 0.7
(-3)
A 		6.2
(3)
A 		1.2
(-2.5)
A 		1
(-2.7)
A 		6
C 0.7
(-3)
A 		0.9
(-2.9)
A 		5.5
(0.1)
A 		10
(3)
A 		9
avr 0.8
(-3) 		2.6
(-1) 		2.4
(-1.2) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2
(-2.7)
A 		1
(-2.9)
A 		7.7
(-1.7)
A 		33.2
(2.7)
M 		34.8
(3)
P 		34
B 0.7
(-3)
A 		3.7
(-2.7)
A 		1.2
(-3)
A 		4.5
(-2.6)
A 		54.7
(2.1)
P 		64.1
(3)
P 		63
C 1.4
(-3)
A 		11.8
(-1.7)
A 		1
(-3)
A 		10.8
(-1.8)
A 		32.3
(0.8)
P 		50.5
(3)
P 		50
avr 0.8
(-3) 		5.8
(-2.4) 		1.1
(-3) 		7.7
(-2.2) 		40.1
(1.8) 		49.8
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20877
Sequence Type Exemplar sequence
Representative Public ID C35102 NCBI
Target Description C35102_rc /REP_DB=TREMBL Accession /GB=C35102 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk423g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061929 NCBI Caenorhabditis elegans F22E5.17 (F22E5.17) mRNA, complete cds. 11/11 None
F22E5.17 ENSEMBL cdna:known chromosome:CEL140:II:2678066:2679098:1 gene:F22E5.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2678807-2679087(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22E5.17
Entrez Gene 173611 Entrez gene
SwissProt Q95X85 EMBL-EBI
WormBase CE27992 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494330 F22E5.17 [Caenorhabditis elegans] gb|AAK68344.1| Hypothetical protein F22E5.17 [Caenorhabditis elegans] 1.0E-141
Sequence
Target Sequence 
>C. ELEGANS:174149_AT
atggagcttacgagccaggaggtcaacgtgtttctcaaaggctggactgaaaattcaaat
ctggagcatatccgtctggaccttgaagagtttgatggagaggttgcactggaaggtctt
ccgctgagaaaggttaccgctgaaaagaagttggacatgaatgtggacagaagatggacg
gtgtataagattgagaagaacgacgggacacgtgcggtgattctcacgagacgtaggcgg
tttgtgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGCTTACGAGCCAGGAGGTCA 491 49 14 Antisense
CGAGCCAGGAGGTCAACGTGTTTCT 117 249 24 Antisense
AACGTGTTTCTCAAAGGCTGGACTG 57 145 38 Antisense
AATCTGGAGCATATCCGTCTGGACC 331 167 71 Antisense
ATCCGTCTGGACCTTGAAGAGTTTG 83 37 83 Antisense
GAGAGGTTGCACTGGAAGGTCTTCC 110 391 111 Antisense
GGAAGGTCTTCCGCTGAGAAAGGTT 634 359 124 Antisense
TTCCGCTGAGAAAGGTTACCGCTGA 479 697 132 Antisense
GAAGAACGACGGGACACGTGCGGTG 142 337 208 Antisense
ACGTGCGGTGATTCTCACGAGACGT 630 91 223 Antisense
CACGAGACGTAGGCGGTTTGTGCTG 132 199 238 Antisense
Sequence Source Affymetrix Proprietary Database