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[174148_at]

Description C33596_rc /REP_DB=TREMBL Accession /GB=C33596 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk372g5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 87      4grp_high_8_8 > 13      6grp_total > 87      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 141.7
(-2.6)
P 		187.3
(-2)
P 		110.8
(-3)
P 		563.5
(3)
P 		453
B 146.8
(-2.3)
P 		138.7
(-2.5)
P 		102.5
(-3)
P 		504.2
(3)
P 		402
C 129.5
(-2.4)
P 		94.7
(-3)
A 		122.2
(-2.6)
P 		471.9
(3)
P 		377
avr 139.3
(-2.6) 		140.2
(-2.6) 		111.8
(-3) 		513.2
(3) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 75.1
(-3)
A 		129.6
(-2)
P 		99
(-2.5)
P 		197.6
(-0.7)
P 		197.7
(-0.7)
P 		392.9
(3)
P 		318
B 76.8
(-3)
P 		91.7
(-2.7)
P 		139.8
(-1.7)
P 		107
(-2.4)
P 		211.2
(-0.3)
P 		373.2
(3)
P 		296
C 131.2
(-2.4)
P 		109.1
(-3)
P 		162.8
(-1.6)
P 		177.6
(-1.3)
P 		244.9
(0.4)
P 		347.2
(3)
P 		238
avr 94.4
(-3) 		110.1
(-2.7) 		133.9
(-2.1) 		160.7
(-1.6) 		217.9
(-0.3) 		371.1
(3) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 51.6
(-0.5)
P 		40.7
(-1.7)
P 		29
(-3)
P 		82.5
(3)
P 		54
B 46.8
(-1.3)
P 		34.2
(-2.3)
P 		23.8
(-3)
P 		107.4
(3)
P 		84
C 42.9
(-1.2)
P 		27.2
(-3)
A 		42.6
(-1.2)
P 		79.6
(3)
P 		52
avr 47.1
(-1.4) 		34
(-2.8) 		31.8
(-3) 		89.8
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 13.8
(-3)
A 		46.1
(-0.6)
P 		21.6
(-2.4)
P 		50.1
(-0.3)
P 		59.7
(0.4)
P 		95.7
(3)
P 		82
B 26.7
(-3)
P 		30.5
(-2.8)
P 		33.9
(-2.6)
P 		28.3
(-2.9)
P 		85.8
(0.2)
P 		139.2
(3)
P 		113
C 48.6
(-1.9)
P 		33.3
(-3)
P 		41.4
(-2.4)
P 		35.7
(-2.8)
P 		79.3
(0.3)
P 		116.2
(3)
P 		83
avr 29.7
(-3) 		36.6
(-2.5) 		32.3
(-2.8) 		38
(-2.4) 		74.9
(0.1) 		117
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21678
Sequence Type Exemplar sequence
Representative Public ID C33596 NCBI
Target Description C33596_rc /REP_DB=TREMBL Accession /GB=C33596 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk372g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073167 NCBI Caenorhabditis elegans C27H6.3 (C27H6.3) mRNA, complete cds. 11/11 A 
SNAP00000032973 ENSEMBL cdna:SNAP chromosome:CEL140:V:9985462:9986467:1 10/11 None
GENEFINDER00000032978 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9983983:9986467:1 10/11 None
C27H6.3 ENSEMBL cdna:known chromosome:CEL140:V:9983918:9986467:1 gene:C27H6.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9986117-9986440(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27H6.3
Entrez Gene 179389 Entrez gene
SwissProt O17608 EMBL-EBI
WormBase CE31321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02794 Hypothetical protein C27H6.3 [Caenorhabditis elegans] ref|NP_505568.2| C27H6.3 [Caenorhabditis elegans] 0.0
blast CAE72293 Hypothetical protein CBG19423 [Caenorhabditis briggsae] 0.0
blast CAB02794 Hypothetical protein C27H6.3 [Caenorhabditis elegans] ref|NP_505568.2| C27H6.3 [Caenorhabditis elegans] 1.0E-154
blast CAE72293 Hypothetical protein CBG19423 [Caenorhabditis briggsae] 1.0E-115
blast XP_415017 PREDICTED: similar to chromosome 20 open reading frame 72 [Gallus gallus] 4.0E-11
blast XP_415017 PREDICTED: similar to chromosome 20 open reading frame 72 [Gallus gallus] 5.0E-11
Sequence
Target Sequence 
>C. ELEGANS:174148_AT
tcctcgttcagcacacagcgcgaggatagtttatcctacacaagctatgtccgtcaactg
gctgcatacgcttctgcgtttaatcatgatgttagatttgaaaatctaccttttgtgaag
caaggaatattggttagtctgaaagaagatgggtcacctgctgaagtttatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCGTTCAGCACACAGCGCGAGG 570 593 23 Antisense
GCACACAGCGCGAGGATAGTTTATC 346 317 33 Antisense
GGATAGTTTATCCTACACAAGCTAT 644 509 46 Antisense
TATCCTACACAAGCTATGTCCGTCA 646 657 54 Antisense
CAAGCTATGTCCGTCAACTGGCTGC 80 187 63 Antisense
TGGCTGCATACGCTTCTGCGTTTAA 336 545 81 Antisense
ACGCTTCTGCGTTTAATCATGATGT 15 93 90 Antisense
GAAAATCTACCTTTTGTGAAGCAAG 706 351 122 Antisense
CAAGGAATATTGGTTAGTCTGAAAG 602 183 143 Antisense
GAAGATGGGTCACCTGCTGAAGTTT 707 337 167 Antisense
GGGTCACCTGCTGAAGTTTATCAAA 429 497 173 Antisense
Sequence Source Affymetrix Proprietary Database