[Home] | [Total List]

[174147_at]

Description C52850_rc /REP_DB=TREMBL Accession /GB=C52850 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk285c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 41      6grp_total > 02      4grp_total > 53      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 739
1 2 3 4 range
A 1025
(3)
P 		587.3
(-0.6)
P 		502.1
(-1.2)
P 		286
(-3)
P 		739
B 1002.9
(3)
P 		801.2
(0.7)
P 		791.1
(0.6)
P 		482.2
(-3)
P 		521
C 999.3
(3)
P 		782.6
(1.2)
P 		874.5
(1.9)
P 		289.4
(-3)
P 		710
avr 1009.1
(3) 		723.7
(0.4) 		722.6
(0.4) 		352.5
(-3) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 695
1 2 3 4 5 6 range
A 647.4
(0.6)
P 		865.8
(2.8)
P 		536.3
(-0.5)
P 		518.1
(-0.7)
P 		889.1
(3)
P 		281.9
(-3)
P 		607
B 976.6
(3)
P 		926.6
(2.5)
P 		647.4
(-0.6)
P 		867.2
(1.8)
P 		690.1
(-0.1)
P 		421.9
(-3)
P 		555
C 816.5
(2.9)
P 		828.5
(3)
P 		615.8
(0.4)
P 		501.9
(-1)
P 		746
(2)
P 		332.4
(-3)
P 		496
avr 813.5
(2.3) 		873.6
(3) 		599.8
(-0.1) 		629.1
(0.2) 		775.1
(1.9) 		345.4
(-3) 		528
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 373.2
(3)
P 		127.5
(-1.4)
P 		131.3
(-1.4)
P 		41.9
(-3)
P 		331
B 319.8
(3)
P 		197.9
(-0.4)
P 		183.3
(-0.8)
P 		102.8
(-3)
P 		217
C 330.8
(3)
P 		225
(0.7)
P 		304.8
(2.4)
P 		48.8
(-3)
P 		282
avr 341.3
(3) 		183.5
(-0.4) 		206.5
(0.1) 		64.5
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 119.3
(-1.7)
P 		307.9
(3)
P 		116.8
(-1.8)
P 		131.4
(-1.4)
P 		268.3
(2)
P 		68.6
(-3)
P 		239
B 339.8
(3)
P 		308.4
(2)
P 		157.2
(-3)
P 		229.7
(-0.6)
P 		280.4
(1)
P 		157.3
(-3)
P 		183
C 302.6
(3)
P 		252.8
(1.5)
P 		156.7
(-1.3)
P 		100.9
(-3)
P 		241.4
(1.2)
P 		111.3
(-2.7)
P 		202
avr 253.9
(1.8) 		289.7
(3) 		143.6
(-1.9) 		154
(-1.6) 		263.4
(2.1) 		112.4
(-3) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22381
Sequence Type Exemplar sequence
Representative Public ID C52850 NCBI
Target Description C52850_rc /REP_DB=TREMBL Accession /GB=C52850 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk285c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077910 NCBI Caenorhabditis elegans T21H8.1 (T21H8.1) mRNA, complete cds. 11/11 None
T21H8.1 ENSEMBL cdna:known chromosome:CEL140:X:13864959:13873278:-1 gene:T21H8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13864998-13865315(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21H8.1
Entrez Gene 181499 Entrez gene
SwissProt Q94071 EMBL-EBI
WormBase CE37412 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17182.1.S1_S_AT similar to PTPRF interacting protein binding protein 1 isoform 1 cfa
CANINE_2:CFAAFFX.17206.1.S1_S_AT similar to PTPRF interacting protein binding protein 1 isoform 1 cfa
DROSOPHILA_2:1627677_S_AT dm
DROSGENOME1:148721_AT dm
CHICKEN:GGA.12993.1.S1_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) gga
CHICKEN:GGA.4727.1.S1_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) gga
CHICKEN:GGAAFFX.8949.1.S1_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) gga
HG-U133A:203736_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133A_2:203736_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133_PLUS_2:203736_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HU35KSUBC:RC_N20066_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HU35KSUBD:RC_AA459403_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133_PLUS_2:214375_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133A_2:214375_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-FOCUS:214375_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133A:214375_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
U133_X3P:G4505986_3P_A_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
U133_X3P:HS2.382993.1.S1_3P_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
U133_X3P:HS.133207.1.A1_3P_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
U133_X3P:HS.133207.1.A1_3P_A_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
U133_X3P:HS.133207.0.A2_3P_X_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
U133_X3P:HS.133207.0.A2_3P_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
U133_X3P:203735_3P_X_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133_PLUS_2:1569464_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133_PLUS_2:203735_X_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133A_2:203735_X_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133A:203735_X_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133A_2:214374_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133_PLUS_2:214374_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U133A:214374_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U95AV2:37848_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U95B:45378_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U95B:57650_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U95D:73626_F_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U95E:81832_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
HG-U95D:82998_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) hs
MG-U74BV2:162892_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) mm
MOE430B:1452759_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) mm
MOUSE430_2:1452759_S_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) mm
MOE430B:1443029_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) mm
MOUSE430_2:1443029_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) mm
MOE430B:1445577_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) mm
MOUSE430_2:1445577_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) mm
MU19KSUBA:TC19514_AT MKIAA1230 protein mm
MU19KSUBA:TC21338_AT MKIAA1230 protein mm
MU19KSUBC:TC39294_AT MKIAA1230 protein mm
MU19KSUBC:TC42120_AT MKIAA1230 protein mm
RAE230B:1392565_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted) rn
RAT230_2:1392565_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted) rn
RG-U34B:RC_AA850954_AT PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB01771 Hypothetical protein T21H8.1 [Caenorhabditis elegans] ref|NP_510311.2| T21H8.1 [Caenorhabditis elegans] sp|Q94071|LIPB_CAEEL Liprin beta (LAR-interacting protein beta) 0.0
blast CAE63073 Hypothetical protein CBG07358 [Caenorhabditis briggsae] 0.0
blast AAH78009 Ppfibp2-prov protein [Xenopus laevis] 4.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.6E-11
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.6E-13
Sequence
Target Sequence 
>C. ELEGANS:174147_AT
atttccatcattaaaaccattcatcatacacttaattgttatcgtgcaaaaattttctat
ttttattctttatttcctgaaaatccaaatccattttcatacccaaccaaacttattttg
agctgaattgtagatcaaccctcactacaacctctccactcacacccaccttccacgcaa
caattggttcatccattttctgagatgaacctcaactttttcatgtgacttatttcatat
gtttccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCATCATTAAAACCATTCATC 596 17 13 Antisense
AACCATTCATCATACACTTAATTGT 372 147 27 Antisense
TTCTATTTTTATTCTTTATTTCCTG 236 691 67 Antisense
ATCCAAATCCATTTTCATACCCAAC 603 39 95 Antisense
TTCATACCCAACCAAACTTATTTTG 509 667 108 Antisense
GCTGAATTGTAGATCAACCCTCACT 506 295 134 Antisense
TGTAGATCAACCCTCACTACAACCT 107 561 141 Antisense
CCACCTTCCACGCAACAATTGGTTC 426 269 178 Antisense
AATTGGTTCATCCATTTTCTGAGAT 606 179 194 Antisense
GAGATGAACCTCAACTTTTTCATGT 625 395 214 Antisense
GTGACTTATTTCATATGTTTCCAAT 125 483 237 Antisense
Sequence Source Affymetrix Proprietary Database