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[174146_at] amphiphysin like

Description C54687_rc /REP_DB=TREMBL Accession /GB=C54687 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk397e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 85      6grp_total > 56      4grp_total > 23      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 501
1 2 3 4 range
A 859.5
(3)
P 		671.7
(-0.9)
P 		572
(-3)
P 		573.2
(-3)
P 		288
B 964.2
(1.4)
P 		673.7
(-3)
P 		671.4
(-3)
P 		1073.1
(3)
P 		402
C 916.8
(2)
P 		740.7
(-3)
P 		815.2
(-0.9)
P 		950.6
(3)
P 		210
avr 913.5
(3) 		695.4
(-2.8) 		686.2
(-3) 		865.6
(1.7) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 646.1
(-2.6)
P 		907.2
(3)
P 		865.1
(2.1)
P 		625.4
(-3)
P 		868.5
(2.2)
P 		696.4
(-1.5)
P 		282
B 681.8
(-2.4)
P 		762.4
(-0.1)
P 		675.8
(-2.6)
P 		785.6
(0.6)
P 		662.4
(-3)
P 		866.4
(3)
P 		204
C 825.9
(-0.4)
P 		839.5
(-0.2)
P 		658.8
(-2.9)
P 		1054.9
(3)
P 		650.9
(-3)
P 		977.6
(1.9)
P 		404
avr 717.9
(-3) 		836.4
(2.5) 		733.2
(-2.3) 		822
(1.8) 		727.3
(-2.6) 		846.8
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 312.9
(3)
P 		145.8
(-1.4)
P 		149.5
(-1.3)
P 		83.9
(-3)
P 		229
B 307.5
(3)
P 		166.4
(-2.6)
P 		155.6
(-3)
P 		228.7
(-0.1)
P 		152
C 303.5
(3)
P 		212.9
(-0.8)
P 		284.1
(2.2)
P 		160.3
(-3)
P 		143
avr 308
(3) 		175
(-2.3) 		196.4
(-1.5) 		157.6
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 119.1
(-3)
P 		322.6
(3)
P 		188.4
(-1)
P 		158.6
(-1.8)
P 		262.1
(1.2)
P 		169.5
(-1.5)
P 		204
B 237.2
(-0.2)
P 		253.8
(0.4)
P 		164.1
(-3)
P 		208.1
(-1.3)
P 		269.1
(1)
P 		323.1
(3)
P 		159
C 306.1
(2.2)
P 		256.1
(0.3)
P 		167.7
(-3)
P 		212.2
(-1.3)
P 		210.6
(-1.4)
P 		327.3
(3)
P 		160
avr 220.8
(-0.3) 		277.5
(3) 		173.4
(-3) 		193
(-1.9) 		247.3
(1.3) 		273.3
(2.8) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21372
Sequence Type Exemplar sequence
Representative Public ID C54687 NCBI
Target Description C54687_rc /REP_DB=TREMBL Accession /GB=C54687 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk397e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069310 NCBI Caenorhabditis elegans F58G6.1 (F58G6.1) mRNA, complete cds. 11/11 None
F58G6.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:9644222:9647850:-1 gene:F58G6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9644348-9644631(-) 100.0 100.0
Public Domain and Genome References
Gene Title amphiphysin like
Ensembl F58G6.1
Entrez Gene 177797 Entrez gene
SwissProt Q21004 EMBL-EBI
WormBase CE03428 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17984.1.S1_AT similar to Myc box dependent interacting protein 1 (Bridging integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein-1) cfa
CANINE_2:CFA.21359.1.S1_S_AT similar to Myc box dependent interacting protein 1 (Bridging integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein-1) cfa
CANINE_2:CFAAFFX.7877.1.S1_AT similar to Myc box dependent interacting protein 1 (Bridging integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein-1) cfa
CANINE_2:CFAAFFX.7877.1.S1_S_AT similar to Myc box dependent interacting protein 1 (Bridging integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein-1) cfa
CHICKEN:GGAAFFX.11745.1.S1_S_AT bridging integrator 1 gga
HG-U133A:202931_X_AT bridging integrator 1 hs
HG-U133_PLUS_2:202931_X_AT bridging integrator 1 hs
HG-U133A_2:202931_X_AT bridging integrator 1 hs
HG-U133_PLUS_2:214643_X_AT bridging integrator 1 hs
HG-U133A_2:214643_X_AT bridging integrator 1 hs
HG-U133A:214643_X_AT bridging integrator 1 hs
HG-U133_PLUS_2:210202_S_AT bridging integrator 1 hs
HG-U133A:210202_S_AT bridging integrator 1 hs
HG-FOCUS:210202_S_AT bridging integrator 1 hs
HG-U133A_2:210202_S_AT bridging integrator 1 hs
HG-U95AV2:459_S_AT bridging integrator 1 hs
HC-G110:459_S_AT bridging integrator 1 hs
HUGENEFL:U68485_AT bridging integrator 1 hs
HG-U133A:210201_X_AT bridging integrator 1 hs
HG-U133_PLUS_2:210201_X_AT bridging integrator 1 hs
HG-U133A_2:210201_X_AT bridging integrator 1 hs
U133_X3P:G4757747_3P_X_AT bridging integrator 1 hs
U133_X3P:G2199534_3P_X_AT bridging integrator 1 hs
U133_X3P:HS.193163.8.A1_3P_A_AT bridging integrator 1 hs
U133_X3P:HS.193163.10.A2_3P_X_AT bridging integrator 1 hs
HG-U133A_2:214439_X_AT bridging integrator 1 hs
HG-U133_PLUS_2:214439_X_AT bridging integrator 1 hs
HG-U133A:214439_X_AT bridging integrator 1 hs
HG-U95AV2:32238_AT bridging integrator 1 hs
HG-U95D:75059_AT bridging integrator 1 hs
MOE430A:1425532_A_AT bridging integrator 1 mm
MOUSE430A_2:1425532_A_AT bridging integrator 1 mm
MOUSE430_2:1425532_A_AT bridging integrator 1 mm
MU11KSUBA:U86405_S_AT bridging integrator 1 mm
MU11KSUBB:MSA.2863.0_S_AT bridging integrator 1 mm
MG-U74AV2:99668_AT bridging integrator 1 mm
MG-U74AV2:92220_S_AT bridging integrator 1 mm
MOE430A:1423618_AT bridging integrator 1 mm
MOUSE430A_2:1423618_AT bridging integrator 1 mm
MOUSE430_2:1423618_AT bridging integrator 1 mm
MOE430B:1444120_AT bridging integrator 1 mm
MOUSE430_2:1444120_AT bridging integrator 1 mm
MU19KSUBA:TC19587_S_AT Bridging integrator 1 (Bin1), mRNA mm
RG-U34A:RC_AI102031_G_AT hypothetical gene supported by NM_053959 rn
RG-U34B:RC_AI059955_S_AT hypothetical gene supported by NM_053959 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6897 endocytosis inferred from electronic annotation QuickGO AmiGO
7268 synaptic transmission inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92465 Hypothetical protein F58G6.1 [Caenorhabditis elegans] ref|NP_501711.1| F58G6.1 [Caenorhabditis elegans] 0.0
blast CAE72796 Hypothetical protein CBG20071 [Caenorhabditis briggsae] 0.0
blast XP_782507 PREDICTED: similar to bridging integrator 1 isoform 8 [Strongylocentrotus purpuratus] 5.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR004148 EMBL-EBI BAR domain 2.5E-117
Pfam IPR001452 EMBL-EBI SH3 7.2E-8
Sequence
Target Sequence 
>C. ELEGANS:174146_AT
tttcattttatttatcctacttacataacattcaaacatataactggattccaagatttt
gctgtacaataatatatattcagttgaaaattttaagatccttataactttatattgcct
actccatcgagataatgctaaaattttttttttcgtgttctagcttctcccaaaccgttg
tgattcatttataatacgtttccttccttcaatgatataagttgacagtagttgcatttt
actt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCATTTTATTTATCCTACTTACA 251 673 22 Antisense
ATCCTACTTACATAACATTCAAACA 221 37 35 Antisense
CATTCAAACATATAACTGGATTCCA 689 213 50 Antisense
CTGGATTCCAAGATTTTGCTGTACA 216 241 65 Antisense
ATAACTTTATATTGCCTACTCCATC 343 25 125 Antisense
TTTATATTGCCTACTCCATCGAGAT 701 673 130 Antisense
TGCCTACTCCATCGAGATAATGCTA 475 585 137 Antisense
CTTCTCCCAAACCGTTGTGATTCAT 688 217 185 Antisense
TTATAATACGTTTCCTTCCTTCAAT 82 679 210 Antisense
ACGTTTCCTTCCTTCAATGATATAA 340 93 217 Antisense
AGTTGACAGTAGTTGCATTTTACTT 258 65 241 Antisense
Sequence Source Affymetrix Proprietary Database