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[174145_at]

Description CEC835_rc /REP_DB=TREMBL Accession /GB=C07835 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk167b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 78      6grp_total > 95      4grp_total > 62      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 680
1 2 3 4 range
A 1508.8
(2.8)
P 		851.4
(-3)
P 		1531.7
(3)
P 		945.6
(-2.2)
P 		680
B 1447.7
(2.1)
P 		1345.8
(1)
P 		1527.7
(3)
P 		986.8
(-3)
P 		541
C 1449.8
(2.4)
P 		1201.4
(-1.8)
P 		1485.8
(3)
P 		1127.9
(-3)
P 		358
avr 1468.8
(2.4) 		1132.9
(-1.6) 		1515.1
(3) 		1020.1
(-3) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1100
1 2 3 4 5 6 range
A 1204.6
(-3)
P 		1277.4
(-2.5)
P 		1292.1
(-2.4)
P 		1365.2
(-1.9)
P 		2055.1
(3)
P 		1825.2
(1.4)
P 		851
B 1094.6
(-3)
P 		1197.3
(-2.3)
P 		1188.6
(-2.3)
P 		1843.7
(2.3)
P 		1835.5
(2.3)
P 		1936.9
(3)
P 		842
C 955.6
(-3)
P 		1200
(-1.6)
P 		1404.5
(-0.4)
P 		1988.2
(3)
P 		1521.8
(0.3)
P 		1500
(0.2)
P 		1033
avr 1084.9
(-3) 		1224.9
(-1.8) 		1295.1
(-1.2) 		1732.4
(2.4) 		1804.1
(3) 		1754
(2.6) 		719
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 549.3
(3)
P 		184.8
(-2.3)
P 		400.4
(0.8)
P 		138.4
(-3)
P 		411
B 461.7
(3)
P 		332.4
(-0.1)
P 		354
(0.4)
P 		210.3
(-3)
P 		251
C 479.9
(2.3)
P 		345.4
(-0.2)
P 		517.9
(3)
P 		190.2
(-3)
P 		328
avr 497
(3) 		287.5
(-1) 		424.1
(1.6) 		179.6
(-3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 222.1
(-3)
P 		454.3
(0.5)
P 		281.4
(-2.1)
P 		346.2
(-1.1)
P 		620.1
(3)
P 		444.4
(0.4)
P 		398
B 380.9
(-1.8)
P 		398.5
(-1.6)
P 		288.6
(-3)
P 		488.3
(-0.4)
P 		745.7
(3)
P 		722.3
(2.7)
P 		457
C 354.2
(-3)
P 		366.2
(-2.5)
P 		357.5
(-2.9)
P 		399.8
(-1.2)
P 		492.4
(2.6)
P 		502.2
(3)
P 		148
avr 319.1
(-2.8) 		406.3
(-1.1) 		309.2
(-3) 		411.4
(-1) 		619.4
(3) 		556.3
(1.8) 		310
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21371
Sequence Type Exemplar sequence
Representative Public ID CEC835 NCBI
Target Description CEC835_rc /REP_DB=TREMBL Accession /GB=C07835 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk167b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0001.4 ENSEMBL cdna:known chromosome:CEL140:IV:12135123:12137318:-1 gene:B0001.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12135138-12135414(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0001.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93453 Hypothetical protein B0001.4 [Caenorhabditis elegans] ref|NP_502304.2| B0001.4 [Caenorhabditis elegans] sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase (UCK) (Uridine monophosphokinase) (Cytidine monophosphokinase) 1.0E-131
blast CAE62190 Hypothetical protein CBG06237 [Caenorhabditis briggsae] 1.0E-117
blast CAG33562 UCK1 [Homo sapiens] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 1.4E-26
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 6.9E-12
Sequence
Target Sequence 
>C. ELEGANS:174145_AT
gtaattgttttgagcattatgcttaaattcaatgtgcataaatttcaaaacaattgccct
cgttctctatgacatcattcttcttcactttgaaatttcttatgtaattgttgacacagt
tttctctccacagatcccatcctacagtattcatccggccaattttgttagctatatttc
attaatcagttccttgtttagatctaatatattccttattcacttggttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATTGTTTTGAGCATTATGCTTA 438 463 27 Antisense
TCAAAACAATTGCCCTCGTTCTCTA 287 629 71 Antisense
CCTCGTTCTCTATGACATCATTCTT 543 267 84 Antisense
GACATCATTCTTCTTCACTTTGAAA 241 371 97 Antisense
AATTGTTGACACAGTTTTCTCTCCA 202 179 132 Antisense
CAGATCCCATCCTACAGTATTCATC 36 207 157 Antisense
ACAGTATTCATCCGGCCAATTTTGT 277 107 170 Antisense
CATCCGGCCAATTTTGTTAGCTATA 606 209 178 Antisense
ATATTTCATTAATCAGTTCCTTGTT 384 19 200 Antisense
TCAGTTCCTTGTTTAGATCTAATAT 447 623 212 Antisense
TATATTCCTTATTCACTTGGTTCCT 231 661 234 Antisense
Sequence Source Affymetrix Proprietary Database