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[174144_at]

Description C54270_rc /REP_DB=TREMBL Accession /GB=C54270 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk355d5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_highest_8_8 > 45      4grp_high_8_8 > 10      6grp_highest_nonorm > 77      6grp_total > 57      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 622
1 2 3 4 range
A 1361.6
(2.2)
P 		1126
(-0.7)
P 		938.9
(-3)
P 		1428.4
(3)
P 		490
B 1560.6
(3)
P 		974.9
(-3)
P 		1108
(-1.6)
P 		1477.7
(2.2)
P 		586
C 1330.3
(1.7)
P 		1052.4
(-3)
P 		1098.3
(-2.2)
P 		1405.4
(3)
P 		353
avr 1417.5
(2.7) 		1051.1
(-3) 		1048.4
(-3) 		1437.2
(3) 		389

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1055
1 2 3 4 5 6 range
A 1709.5
(1.4)
P 		1382.2
(-0.5)
P 		1106.7
(-2.1)
P 		942.4
(-3)
P 		1238.9
(-1.3)
P 		1982
(3)
P 		1040
B 1622.1
(0.9)
P 		1242.5
(-1.3)
P 		982.3
(-2.8)
P 		1452.7
(-0.1)
P 		942.7
(-3)
P 		1996.9
(3)
P 		1054
C 1274.7
(-0.3)
P 		1346
(0.6)
P 		1424
(1.5)
P 		1062.7
(-3)
P 		1059.2
(-3)
P 		1542.8
(3)
P 		484
avr 1535.4
(0.6) 		1323.6
(-1.1) 		1171
(-2.3) 		1152.6
(-2.4) 		1080.3
(-3) 		1840.6
(3) 		760
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 495.7
(3)
P 		244.4
(-2.3)
P 		245.5
(-2.2)
P 		209.1
(-3)
P 		287
B 497.7
(3)
P 		240.8
(-3)
P 		256.7
(-2.6)
P 		314.9
(-1.3)
P 		257
C 440.4
(3)
P 		302.6
(-1.1)
P 		382.8
(1.3)
P 		237
(-3)
P 		203
avr 477.9
(3) 		262.6
(-2.8) 		295
(-1.9) 		253.7
(-3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 531
1 2 3 4 5 6 range
A 315.1
(-1.2)
P 		491.6
(3)
P 		241
(-3)
P 		239
(-3)
P 		373.9
(0.2)
P 		482.6
(2.8)
P 		253
B 564.4
(0.9)
P 		413.6
(-0.9)
P 		238.5
(-3)
P 		384.8
(-1.3)
P 		383
(-1.3)
P 		744.6
(3)
P 		506
C 472.5
(2.1)
P 		410.7
(0.9)
P 		362.4
(-0.1)
P 		213.7
(-3)
P 		342.7
(-0.4)
P 		516.5
(3)
P 		303
avr 450.7
(0.4) 		438.6
(0.2) 		280.6
(-3) 		279.2
(-3) 		366.5
(-1.3) 		581.2
(3) 		302
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21740
Sequence Type Exemplar sequence
Representative Public ID C54270 NCBI
Target Description C54270_rc /REP_DB=TREMBL Accession /GB=C54270 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk355d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072791 NCBI Caenorhabditis elegans F45F2.10 (F45F2.10) mRNA, complete cds. 11/11 None
F45F2.10 ENSEMBL cdna:known chromosome:CEL140:V:8516167:8520903:-1 gene:F45F2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8516235-8516526(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45F2.10
Entrez Gene 179231 Entrez gene
SwissProt Q22974 EMBL-EBI
WormBase CE28828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48031 Hypothetical protein F45F2.10 [Caenorhabditis elegans] ref|NP_505192.1| F45F2.10 [Caenorhabditis elegans] 0.0
blast CAE58384 Hypothetical protein CBG01513 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 5.4E-6
Pfam IPR002110 EMBL-EBI Ankyrin 38.0
Sequence
Target Sequence 
>C. ELEGANS:174144_AT
cccaaacatcccataactcttctggttcaattaagaacgtctaagtctcaatctacactc
cgttatttcctagtaatagtttaaccttttttcccagttcactttttttaaattaaaatc
aatccggctatccctttgtattgtgtccccgttcattatcttttgccgttgcatatatac
ccactttcctgtgaacaccatcaaaccagttcaagctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAAACATCCCATAACTCTTCTGG 273 257 15 Antisense
TCCCATAACTCTTCTGGTTCAATTA 178 599 23 Antisense
TAAGAACGTCTAAGTCTCAATCTAC 421 637 46 Antisense
TAAGTCTCAATCTACACTCCGTTAT 389 637 56 Antisense
ATCTACACTCCGTTATTTCCTAGTA 121 29 65 Antisense
TAAAATCAATCCGGCTATCCCTTTG 557 639 128 Antisense
GTTCATTATCTTTTGCCGTTGCATA 173 445 165 Antisense
TTTGCCGTTGCATATATACCCACTT 172 669 176 Antisense
TATATACCCACTTTCCTGTGAACAC 255 661 188 Antisense
CCACTTTCCTGTGAACACCATCAAA 223 273 195 Antisense
CACCATCAAACCAGTTCAAGCTCCA 391 201 210 Antisense
Sequence Source Affymetrix Proprietary Database