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[174142_s_at] Zinc finger, C3HC4 type (RING finger)

Description C37588_rc /REP_DB=TREMBL Accession /GB=C37588 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk475e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 73      6grp_total > 56      4grp_total > 61      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 528
1 2 3 4 range
A 803.5
(3)
P 		505.6
(-1)
P 		733.7
(2.1)
P 		353.2
(-3)
P 		450
B 880.9
(3)
P 		855.6
(2.5)
P 		815.1
(1.7)
P 		584.8
(-3)
P 		296
C 818.1
(3)
P 		745.6
(1.8)
P 		752.8
(1.9)
P 		458
(-3)
P 		360
avr 834.2
(3) 		702.3
(0.9) 		767.2
(1.9) 		465.3
(-3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 454
(-0.5)
P 		524.2
(2.3)
P 		529.4
(2.5)
P 		492.5
(1)
P 		391.3
(-3)
P 		542.4
(3)
P 		151
B 598
(-1.5)
P 		586.5
(-1.9)
P 		736.3
(2.7)
P 		612.5
(-1.1)
P 		550.6
(-3)
P 		744.4
(3)
P 		194
C 605.2
(0.5)
P 		608.6
(0.6)
P 		454.5
(-3)
P 		551.6
(-0.8)
P 		479.5
(-2.4)
P 		713.6
(3)
P 		259
avr 552.4
(-0.6) 		573.1
(0.1) 		573.4
(0.1) 		552.2
(-0.6) 		473.8
(-3) 		666.8
(3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 292.6
(3)
P 		109.8
(-1.6)
P 		191.8
(0.5)
P 		51.7
(-3)
P 		241
B 280.9
(3)
P 		211.3
(0.3)
P 		188.9
(-0.5)
P 		124.6
(-3)
P 		156
C 270.8
(3)
P 		214.4
(1.3)
P 		262.4
(2.7)
P 		77.2
(-3)
P 		194
avr 281.4
(3) 		178.5
(-0.1) 		214.4
(1) 		84.5
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 83.7
(-3)
P 		186.4
(3)
P 		115.3
(-1.2)
P 		124.9
(-0.6)
P 		118.1
(-1)
P 		132.1
(-0.2)
P 		103
B 208.1
(-0.6)
P 		195.2
(-1.3)
P 		178.8
(-2.1)
P 		162.2
(-3)
P 		223.7
(0.2)
P 		277.6
(3)
P 		115
C 224.3
(2.3)
P 		185.7
(0.5)
P 		115.7
(-2.8)
P 		110.9
(-3)
P 		155.2
(-0.9)
P 		238.9
(3)
P 		128
avr 172
(-0.2) 		189.1
(1.1) 		136.6
(-2.7) 		132.7
(-3) 		165.7
(-0.6) 		216.2
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174142_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21365
Sequence Type Exemplar sequence
Representative Public ID C37588 NCBI
Target Description C37588_rc /REP_DB=TREMBL Accession /GB=C37588 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk475e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070120 NCBI Caenorhabditis elegans B0564.7 (B0564.7) mRNA, complete cds. 11/11 A 
SNAP00000043352 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13100686:13104485:1 11/11 None
GENEFINDER00000043364 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13100686:13104485:1 11/11 None
B0564.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:13100683:13104591:1 gene:B0564.7 11/11 None
B0564.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:13100685:13104593:1 gene:B0564.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13104205-13104532(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl B0564.7
Entrez Gene 178263 Entrez gene
SwissProt Q17532 EMBL-EBI
WormBase CE36971 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97769 Hypothetical protein B0564.7 [Caenorhabditis elegans] ref|NP_502521.2| B0564.7 [Caenorhabditis elegans] 0.0
blast CAE58655 Hypothetical protein CBG01824 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174142_S_AT
gctcgaaaaaacccaggcctctatttttctacggatggttgcaaactaaacagaacacag
aaacgagcggcgaaatcaatacagttgggcaagaacaattgggacttcgactgatgcgtt
ccgctggcttcgatccagtagtcgtcttcaaaacggaactcgactattgctccacagaaa
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGAAAAAACCCAGGCCTCTATT 218 283 24 Antisense
AGGCCTCTATTTTTCTACGGATGGT 482 53 38 Antisense
TTTTCTACGGATGGTTGCAAACTAA 567 675 48 Antisense
ACGAGCGGCGAAATCAATACAGTTG 534 93 86 Antisense
GGGCAAGAACAATTGGGACTTCGAC 346 491 110 Antisense
ATTGGGACTTCGACTGATGCGTTCC 271 5 121 Antisense
CGCTGGCTTCGATCCAGTAGTCGTC 642 253 145 Antisense
GCTTCGATCCAGTAGTCGTCTTCAA 456 305 150 Antisense
GTAGTCGTCTTCAAAACGGAACTCG 125 457 161 Antisense
AAACGGAACTCGACTATTGCTCCAC 655 125 174 Antisense
ACTCGACTATTGCTCCACAGAAATT 545 99 181 Antisense
Sequence Source Affymetrix Proprietary Database