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[174141_at]

Description CEK069E1F /REP_DB=TREMBL Accession /GB=D69419 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk69e1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 02      6grp_total > 08      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1482
1 2 3 4 range
A 2696.3
(1.6)
P 		2452.6
(0.4)
P 		2993.3
(3)
P 		1730.8
(-3)
P 		1263
B 2247.2
(0.4)
P 		2691
(3)
P 		2634.8
(2.7)
P 		1678.9
(-3)
P 		1012
C 2462.7
(0.6)
P 		3045.9
(3)
P 		2741.1
(1.8)
P 		1564.4
(-3)
P 		1482
avr 2468.7
(1.3) 		2729.8
(2.7) 		2789.7
(3) 		1658
(-3) 		1132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1651
1 2 3 4 5 6 range
A 3220.2
(3)
P 		1969.9
(-2.3)
P 		2296.3
(-0.9)
P 		1814.3
(-3)
P 		2485.7
(-0.1)
P 		1890.2
(-2.7)
P 		1406
B 3101.6
(3)
P 		2277.4
(-1.7)
P 		2224.7
(-2)
P 		2522.6
(-0.3)
P 		2057.8
(-3)
P 		2341.5
(-1.4)
P 		1044
C 3076.9
(3)
P 		2458.2
(0.5)
P 		1889.5
(-1.7)
P 		2367.2
(0.2)
P 		1881.6
(-1.8)
P 		1569.4
(-3)
P 		1508
avr 3132.9
(3) 		2235.2
(-1.5) 		2136.8
(-2) 		2234.7
(-1.5) 		2141.7
(-2) 		1933.7
(-3) 		1199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 728
1 2 3 4 range
A 981.7
(3)
P 		532.4
(-0.7)
P 		782.5
(1.4)
P 		253.4
(-3)
P 		728
B 716.6
(3)
P 		664.6
(2.1)
P 		610.5
(1.2)
P 		357.8
(-3)
P 		359
C 815.2
(1.8)
P 		875.7
(2.3)
P 		955.4
(3)
P 		263.8
(-3)
P 		692
avr 837.8
(3) 		690.9
(1.4) 		782.8
(2.4) 		291.7
(-3) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 680
1 2 3 4 5 6 range
A 593.6
(-0.2)
P 		700.6
(2)
P 		500.1
(-2.2)
P 		460.1
(-3)
P 		750.1
(3)
P 		460.2
(-3)
P 		290
B 1079.2
(3)
P 		758.1
(-0.6)
P 		540.2
(-3)
P 		668.2
(-1.6)
P 		836
(0.3)
P 		873.1
(0.7)
P 		539
C 1140.5
(3)
P 		750.1
(-0.5)
P 		480.9
(-3)
P 		476
(-3)
P 		608.9
(-1.8)
P 		525.4
(-2.6)
P 		665
avr 937.8
(3) 		736.3
(0.2) 		507.1
(-3) 		534.8
(-2.6) 		731.7
(0.1) 		619.6
(-1.4) 		431
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21966
Sequence Type Exemplar sequence
Representative Public ID CEK069E1F NCBI
Target Description CEK069E1F /REP_DB=TREMBL Accession /GB=D69419 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk69e1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071024 NCBI Caenorhabditis elegans UNCoordinated family member (unc-60) (unc-60) mRNA, complete cds. 11/11 None
C38C3.5a ENSEMBL cdna:known chromosome:CEL140:V:1474915:1476608:1 gene:C38C3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040099 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178640 3 1 NM_071024 171748_x_at (11), 174141_at (11), 192015_s_at (11)
NM_071025 192015_s_at (11)
NM_071026 193210_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1475930-1476210(+) 100.0 100.0
Public Domain and Genome References
Ensembl C38C3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02461 Uncoordinated protein 60, isoform a [Caenorhabditis elegans] ref|NP_503425.2| UNCoordinated family member (unc-60) [Caenorhabditis elegans] sp|Q07750|ADF1_CAEEL Actin-depolymerizing factor 1 (Uncoordinated protein 60) gb|AAC14458.1| putative. cofilin/destrin homolog. This CDS encodes the first transcript produced from the unc-60 locus. Both transcripts exhibit cofilin/destrin homologies, and share only the 5'-most exon which encodes the initiator methionine [Caenorhabditis elegans] 5.0E-89
blast AAL02462 Uncoordinated protein 60, isoform b [Caenorhabditis elegans] ref|NP_503426.2| UNCoordinated family member (unc-60) [Caenorhabditis elegans] 5.0E-83
blast CAE62475 Hypothetical protein CBG06572 [Caenorhabditis briggsae] 1.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002108 EMBL-EBI Actin-binding, cofilin/tropomyosin type 1.2E-61
Sequence
Target Sequence 
>C. ELEGANS:174141_AT
gtcacatcctcgattattctcgtctctgtctgtcgcattttctccattgcttgatgattt
ctgatcgttttcacgtgtgctctttgaatgtgctagtgcgttgttgtggtgcttttttct
taccaacctcactacttgttcattttttttggtgtcctcaaagaatcatccgttgaaaac
atgactgcggcgatgtgtttcgatgatgtttcttaagcgtcttcttcacattttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACATCCTCGATTATTCTCGTCT 305 465 16 Antisense
TCTGATCGTTTTCACGTGTGCTCTT 41 609 75 Antisense
GTGTGCTCTTTGAATGTGCTAGTGC 680 487 90 Antisense
GTGCTAGTGCGTTGTTGTGGTGCTT 555 479 105 Antisense
TGGTGCTTTTTTCTTACCAACCTCA 366 553 122 Antisense
TACCAACCTCACTACTTGTTCATTT 642 649 136 Antisense
TGTTCATTTTTTTTGGTGTCCTCAA 578 561 152 Antisense
TGGTGTCCTCAAAGAATCATCCGTT 44 553 165 Antisense
ATGACTGCGGCGATGTGTTTCGATG 151 45 196 Antisense
GATGATGTTTCTTAAGCGTCTTCTT 537 411 217 Antisense
TTAAGCGTCTTCTTCACATTTTCAC 85 685 228 Antisense
Sequence Source Affymetrix Proprietary Database