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[174139_at] X box DNA binding protein-1

Description CEC8696 /REP_DB=TREMBL Accession /GB=C13869 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk189d10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 67      6grp_total > 18      4grp_total > 02      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2541
1 2 3 4 range
A 1909.5
(-2.1)
P 		1542.6
(-3)
P 		1576.2
(-2.9)
P 		4068.8
(3)
P 		2526
B 1800
(-2.1)
P 		1528.3
(-3)
P 		1685.7
(-2.5)
P 		3402.2
(3)
P 		1874
C 1779.2
(-2.7)
P 		1687.6
(-3)
P 		1818.3
(-2.6)
P 		3598.2
(3)
P 		1911
avr 1829.6
(-2.3) 		1586.2
(-3) 		1693.4
(-2.7) 		3689.7
(3) 		2104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1291
1 2 3 4 5 6 range
A 2434.3
(3)
P 		2385.8
(2.6)
P 		1738.2
(-3)
P 		1864.5
(-1.9)
P 		1878.8
(-1.8)
P 		1909
(-1.5)
P 		696
B 2455
(3)
P 		1882.7
(-0.3)
P 		1410.1
(-3)
P 		1812.3
(-0.7)
P 		1822.1
(-0.6)
P 		1696.2
(-1.4)
P 		1045
C 2701.4
(3)
P 		1803.6
(-2.1)
P 		1893.8
(-1.6)
P 		1643.5
(-3)
P 		1845.3
(-1.9)
P 		1643.2
(-3)
P 		1058
avr 2530.2
(3) 		2024
(-0.6) 		1680.7
(-3) 		1773.4
(-2.3) 		1848.7
(-1.8) 		1749.5
(-2.5) 		850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 695.3
(3)
P 		334.9
(-3)
P 		412.1
(-1.7)
P 		595.6
(1.3)
P 		360
B 574
(0.4)
P 		377.4
(-3)
P 		390.6
(-2.8)
P 		725
(3)
P 		348
C 589
(1.2)
P 		485.2
(-3)
P 		633.7
(3)
P 		606.7
(1.9)
P 		149
avr 619.4
(2.4) 		399.2
(-3) 		478.8
(-1) 		642.4
(3) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 448.7
(-2.1)
P 		848.5
(3)
P 		378.6
(-3)
P 		472.9
(-1.8)
P 		566.9
(-0.6)
P 		464.8
(-1.9)
P 		470
B 854.2
(3)
P 		626.7
(0.3)
P 		342.4
(-3)
P 		480
(-1.4)
P 		740.3
(1.7)
P 		632.5
(0.4)
P 		512
C 1001.3
(3)
P 		550.3
(-1)
P 		482
(-1.6)
P 		330.5
(-3)
P 		597.1
(-0.6)
P 		550.1
(-1)
P 		671
avr 768.1
(3) 		675.2
(1.5) 		401
(-3) 		427.8
(-2.6) 		634.8
(0.8) 		549.1
(-0.6) 		367
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21096
Sequence Type Exemplar sequence
Representative Public ID CEC8696 NCBI
Target Description CEC8696 /REP_DB=TREMBL Accession /GB=C13869 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk189d10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027566 NCBI Caenorhabditis elegans X-box Binding Protein homolog family member (xbp-1) (xbp-1) mRNA, complete cds. 11/11 None
R74.3.1 ENSEMBL cdna:known chromosome:CEL140:III:4193848:4195319:1 gene:R74.3 11/11 A 
R74.3.2 ENSEMBL cdna:known chromosome:CEL140:III:4193854:4195292:1 gene:R74.3 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044760 5/11 Cross Hyb Matching Probes None
SNAP00000044749 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4194956-4195305(+) 100.0 100.0
Public Domain and Genome References
Gene Title X box DNA binding protein-1
Gene Symbol xbp-1
Ensembl R74.3
Entrez Gene 175541 Entrez gene
SwissProt Q22027 EMBL-EBI
WormBase CE01056 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85273 Hypothetical protein R74.3 [Caenorhabditis elegans] ref|NP_001022737.1| X-box Binding Protein homolog family member (xbp-1) [Caenorhabditis elegans] 1.0E-112
blast AAL60200 X-box binding protein unprocessed isoform [Caenorhabditis elegans] 1.0E-112
blast CAE72866 Hypothetical protein CBG20165 [Caenorhabditis briggsae] 8.0E-49
Sequence
Target Sequence 
>C. ELEGANS:174139_AT
gggatgatgagcttttgggatgtggaaccgaaactggaactggaaccgacgagctgctta
ccgaccccggaaactggaactttgaaactttcgacgaaaattcaatcgacctaaatttct
tccaaaattaatttatatctggtgtatcgttattgtagtgtcctagtgaatttccctcgt
tattattttctccccaaaaatctctccaaatttctccatttcctctctggtattttcttc
ttttcctcttttccttttgtacaaccccaactttcgtattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATGATGAGCTTTTGGGATGTGG 489 495 14 Antisense
GGGATGTGGAACCGAAACTGGAACT 449 489 30 Antisense
GAAACTGGAACTGGAACCGACGAGC 666 355 43 Antisense
GAACTGGAACCGACGAGCTGCTTAC 279 349 50 Antisense
TTCAATCGACCTAAATTTCTTCCAA 394 685 114 Antisense
GGTGTATCGTTATTGTAGTGTCCTA 145 501 154 Antisense
TGTAGTGTCCTAGTGAATTTCCCTC 542 559 167 Antisense
GTCCTAGTGAATTTCCCTCGTTATT 87 469 173 Antisense
TGAATTTCCCTCGTTATTATTTTCT 34 577 180 Antisense
CCATTTCCTCTCTGGTATTTTCTTC 240 271 229 Antisense
TGTACAACCCCAACTTTCGTATTAT 482 559 271 Antisense
Sequence Source Affymetrix Proprietary Database