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[174138_s_at] 40S ribosomal protein S10

Description CEK080H1R /REP_DB=TREMBL Accession /GB=D71739 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 41      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16563
1 2 3 4 range
A 23593.6
(-3)
P 		31281.4
(0.2)
P 		31325.9
(0.3)
P 		37795.4
(3)
P 		14202
B 26018.8
(-2.4)
P 		25116.4
(-3)
P 		27157.4
(-1.7)
P 		34615.2
(3)
P 		9499
C 21232.6
(-3)
P 		25375.6
(-1.4)
P 		21906.9
(-2.7)
P 		36356.4
(3)
P 		15124
avr 23615
(-3) 		27257.8
(-1.3) 		26796.7
(-1.5) 		36255.7
(3) 		12641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9002
1 2 3 4 5 6 range
A 21535
(2.1)
P 		20120
(0.7)
P 		21781
(2.4)
P 		22409.1
(3)
P 		16547
(-3)
P 		21163.1
(1.7)
P 		5862
B 19452.8
(0.9)
P 		19773.4
(1.5)
P 		20544.9
(3)
P 		19426.3
(0.9)
P 		17366
(-3)
P 		17477.3
(-2.8)
P 		3179
C 17671.6
(-0.8)
P 		20958.2
(1.3)
P 		23447.8
(3)
P 		20415.3
(1)
P 		17865.3
(-0.7)
P 		14445.4
(-3)
P 		9002
avr 19553.1
(-0.1) 		20283.9
(0.9) 		21924.6
(3) 		20750.2
(1.5) 		17259.4
(-3) 		17695.3
(-2.4) 		4665
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3058
1 2 3 4 range
A 8590.4
(3)
P 		6790.3
(-0.5)
P 		8189.2
(2.2)
P 		5532.5
(-3)
P 		3058
B 8297.2
(3)
P 		6203.2
(-3)
P 		6293
(-2.7)
P 		7376.5
(0.4)
P 		2094
C 7028.6
(0.6)
P 		7295.6
(1.6)
P 		7635.2
(3)
P 		6130.3
(-3)
P 		1505
avr 7972.1
(3) 		6763
(-1.5) 		7372.5
(0.8) 		6346.4
(-3) 		1626

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3186
1 2 3 4 5 6 range
A 3969.8
(-3)
P 		7155.7
(3)
P 		4743.4
(-1.5)
P 		5683.5
(0.2)
P 		4993.2
(-1.1)
P 		5152.6
(-0.8)
P 		3186
B 6768.6
(2.2)
P 		6581.7
(1.6)
P 		4988.9
(-3)
P 		5145.3
(-2.5)
P 		7055.6
(3)
P 		6517.2
(1.4)
P 		2067
C 6550.1
(3)
P 		6395
(2.6)
P 		5967.9
(1.6)
P 		4105.5
(-3)
P 		5780.9
(1.1)
P 		4835.7
(-1.2)
P 		2445
avr 5762.8
(-0.3) 		6710.8
(3) 		5233.4
(-2.1) 		4978.1
(-3) 		5943.2
(0.3) 		5501.8
(-1.2) 		1733
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174138_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20163
Sequence Type Exemplar sequence
Representative Public ID CEK080H1R NCBI
Target Description CEK080H1R /REP_DB=TREMBL Accession /GB=D71739 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058997 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-10) (rps-10) mRNA, complete cds. 11/11 A 
SNAP00000011281 ENSEMBL cdna:SNAP chromosome:CEL140:I:4583943:4584492:-1 11/11 None
GENEFINDER00000011313 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4583943:4584492:-1 11/11 None
D1007.6.1 ENSEMBL cdna:known chromosome:CEL140:I:4583873:4584506:-1 gene:D1007.6 11/11 None
D1007.6.3 ENSEMBL cdna:known chromosome:CEL140:I:4583874:4584512:-1 gene:D1007.6 11/11 None
D1007.6.2 ENSEMBL cdna:known chromosome:CEL140:I:4583874:4584513:-1 gene:D1007.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4583927-4584360(-) 100.0 100.0
Public Domain and Genome References
Gene Title 40S ribosomal protein S10
Gene Symbol rps-10
Ensembl D1007.6
Entrez Gene 172061 Entrez gene
SwissProt O01869 EMBL-EBI
WormBase CE09041 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248331_AT 40S ribosomal protein S10 (RPS10C) at
CANINE:1583130_AT similar to 40S ribosomal protein S10 cfa
CANINE_2:CFAAFFX.2709.1.S1_S_AT similar to 40S ribosomal protein S10 cfa
DROSOPHILA_2:1622893_AT Ribosomal protein S10b dm
DROSGENOME1:151211_AT Ribosomal protein S10b dm
DROSOPHILA_2:1635528_S_AT Ribosomal protein S10b dm
DROSGENOME1:141358_AT Ribosomal protein S10b dm
MOE430A:1434854_A_AT ribosomal protein S10 mm
MOUSE430A_2:1434854_A_AT ribosomal protein S10 mm
MOUSE430_2:1434854_A_AT ribosomal protein S10 mm
MG-U74AV2:99093_AT ribosomal protein S10 mm
MOUSE430_2:1438723_A_AT ribosomal protein S10 mm
MOUSE430A_2:1438723_A_AT ribosomal protein S10 mm
MOE430A:1438723_A_AT ribosomal protein S10 mm
MOUSE430A_2:1456497_X_AT ribosomal protein S10 mm
MOE430A:1456497_X_AT ribosomal protein S10 mm
MOUSE430_2:1456497_X_AT ribosomal protein S10 mm
MU11KSUBB:W13807_AT ribosomal protein S10 mm
MOE430A:1436384_AT ribosomal protein S10 mm
MOUSE430A_2:1436384_AT ribosomal protein S10 mm
MOUSE430_2:1436384_AT ribosomal protein S10 mm
MOE430A:1416719_A_AT ribosomal protein S10 mm
MOUSE430A_2:1416719_A_AT ribosomal protein S10 mm
MOUSE430_2:1416719_A_AT ribosomal protein S10 mm
MG-U74BV2:109296_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
MU19KSUBB:TC26682_I_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
MU19KSUBB:TC26682_S_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
RG-U34A:X13549_S_AT ribosomal protein S10 rn
RAE230A:1386868_AT ribosomal protein S10 rn
RAT230_2:1386868_AT ribosomal protein S10 rn
YEAST_2:1772550_X_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 Sc
YEAST_2:1776853_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 Sc
Protein Similarities
Method ID Description E-Value
blast AAK18912 Ribosomal protein, small subunit protein 10 [Caenorhabditis elegans] ref|NP_491398.1| Ribosomal Protein, Small subunit family member (rps-10) [Caenorhabditis elegans] 3.0E-83
blast CAE74520 Hypothetical protein CBG22274 [Caenorhabditis briggsae] 5.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR005326 EMBL-EBI Plectin/S10, N-terminal 6.5E-69
Sequence
Target Sequence 
>C. ELEGANS:174138_S_AT
ttgcctcccgcgagttggttaaggagcaatttgcctggcgccactactactggtacttga
ccgacgccggaatcttgtacctccgtgagtacctcgctcttccagctgagatcgtcccag
ccaccatcaagaccaagccaagagagatccgtgtcccacacgaggatagagccccacgcg
ccgctcaaggcgagaagggagaccgtgaagcctacagaaccgagaaggtcaccgaggctg
gaccaggaggagccccagtctacagagccggattcggccgtggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCTCCCGCGAGTTGGTTAAGGA 63 689 28 Antisense
TCCCGCGAGTTGGTTAAGGAGCAAT 420 597 33 Antisense
TAAGGAGCAATTTGCCTGGCGCCAC 416 637 47 Antisense
GCGCCACTACTACTGGTACTTGACC 609 287 65 Antisense
CTACTACTGGTACTTGACCGACGCC 571 225 71 Antisense
TACTTGACCGACGCCGGAATCTTGT 91 625 81 Antisense
TGACCGACGCCGGAATCTTGTACCT 317 569 85 Antisense
CCGGAATCTTGTACCTCCGTGAGTA 164 263 94 Antisense
AATCTTGTACCTCCGTGAGTACCTC 138 167 98 Antisense
GTCTACAGAGCCGGATTCGGCCGTG 268 467 285 Antisense
ACAGAGCCGGATTCGGCCGTGGAGC 176 93 289 Antisense
Sequence Source Affymetrix Proprietary Database