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[174137_s_at]

Description CEK0044G5 /REP_DB=TREMBL Accession /GB=D37395 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44g5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 30      6grp_total > 24      4grp_total > 0      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 630
1 2 3 4 range
A 748
(-0)
P 		485.7
(-3)
P 		643.1
(-1.2)
P 		1010.7
(3)
P 		525
B 731.7
(-1.7)
P 		627.4
(-2.9)
P 		620.6
(-3)
P 		1116
(3)
P 		495
C 754.8
(-0.3)
P 		547.6
(-3)
P 		911.3
(1.7)
P 		1013.9
(3)
P 		466
avr 744.8
(-0.7) 		553.6
(-3) 		725
(-0.9) 		1046.9
(3) 		493

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 690
1 2 3 4 5 6 range
A 769.7
(-0)
P 		825
(0.6)
P 		1022.5
(3)
P 		767.7
(-0.1)
P 		522.8
(-3)
P 		553.9
(-2.6)
P 		500
B 1096.1
(3)
P 		1005.1
(1.9)
P 		959.3
(1.3)
P 		614
(-3)
P 		715.5
(-1.7)
P 		741.3
(-1.4)
P 		482
C 1213
(3)
P 		975.5
(0.6)
P 		647.8
(-2.8)
P 		688.8
(-2.3)
P 		744.9
(-1.8)
P 		623.5
(-3)
P 		590
avr 1026.3
(3) 		935.2
(1.6) 		876.5
(0.7) 		690.2
(-2.2) 		661.1
(-2.7) 		639.6
(-3) 		387
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 272.4
(3)
P 		105.4
(-3)
P 		168.1
(-0.7)
P 		148
(-1.5)
P 		167
B 233.3
(2.7)
P 		154.9
(-2.3)
P 		143.8
(-3)
P 		237.8
(3)
P 		94
C 249.9
(0.5)
P 		157.4
(-3)
P 		317.6
(3)
P 		171
(-2.5)
P 		160
avr 251.9
(3) 		139.2
(-3) 		209.8
(0.8) 		185.6
(-0.5) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 141.9
(-2.7)
P 		293.4
(3)
P 		222.7
(0.3)
P 		194.7
(-0.7)
P 		157.8
(-2.1)
P 		134.8
(-3)
P 		159
B 381.4
(3)
P 		334.5
(1.7)
P 		233
(-1.1)
P 		162.6
(-3)
P 		290.7
(0.5)
P 		276.4
(0.1)
P 		219
C 449.6
(3)
P 		297.7
(0.1)
P 		164.9
(-2.5)
P 		138.5
(-3)
P 		241
(-1)
P 		208.7
(-1.6)
P 		311
avr 324.3
(3) 		308.5
(2.4) 		206.9
(-1.4) 		165.3
(-3) 		229.8
(-0.6) 		206.6
(-1.4) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174137_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22110
Sequence Type Exemplar sequence
Representative Public ID CEK0044G5 NCBI
Target Description CEK0044G5 /REP_DB=TREMBL Accession /GB=D37395 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44g5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076340(11), NM_076341(11), NM_076342(11), NM_001029404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076340 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-306) (tag-306) mRNA, complete cds. 11/11 A 
NM_076341 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-306) (tag-306) mRNA, complete cds. 11/11 None
NM_076342 NCBI Caenorhabditis elegans F14H12.4a (F14H12.4) mRNA, complete cds. 11/11 A 
NM_001029404 NCBI Caenorhabditis elegans F14H12.4b (F14H12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000002247 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4339618:4343557:1 11/11 None
SNAP00000002231 ENSEMBL cdna:SNAP chromosome:CEL140:X:4341821:4342472:1 11/11 None
C24A8.4a ENSEMBL cdna:known chromosome:CEL140:X:4330052:4336008:-1 gene:C24A8.4 11/11 A 
C24A8.4b ENSEMBL cdna:known chromosome:CEL140:X:4333124:4336008:-1 gene:C24A8.4 11/11 None
F14H12.4b ENSEMBL cdna:known chromosome:CEL140:X:4339534:4343494:1 gene:F14H12.4 11/11 A 
F14H12.4a ENSEMBL cdna:known chromosome:CEL140:X:4339534:4343610:1 gene:F14H12.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002228 4/11 Cross Hyb Matching Probes None
GENEFINDER00000002241 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4333134-4333694(-) 100.0 100.0
Public Domain and Genome References
Ensembl C24A8.4
F14H12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39183 Temporarily assigned gene name protein 306, isoform a [Caenorhabditis elegans] ref|NP_508741.2| Temporarily Assigned Gene name family member (tag-306) [Caenorhabditis elegans] 0.0
blast AAK39182 Temporarily assigned gene name protein 306, isoform b [Caenorhabditis elegans] ref|NP_508742.1| Temporarily Assigned Gene name family member (tag-306) [Caenorhabditis elegans] 0.0
blast AAK68327 Hypothetical protein F14H12.4b [Caenorhabditis elegans] ref|NP_001024575.1| F14H12.4b [Caenorhabditis elegans] 0.0
blast AAK68326 Hypothetical protein F14H12.4a [Caenorhabditis elegans] ref|NP_508743.3| F14H12.4a [Caenorhabditis elegans] 0.0
blast AAF75788 STE20-like kinase MST [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-64
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 8.0E-65
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 4.0E-65
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 3.0E-65
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-65
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 2.0E-71
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 1.0E-71
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 6.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.5E-93
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.2E-19
Pfam IPR000719 EMBL-EBI Protein kinase 8.5E-93
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508741.2 2 494-516,531-553
C24A8.4a 2 447-469,484-506
Sequence
Target Sequence 
>C. ELEGANS:174137_S_AT
gatgcaacgttgctaagcgagggaatgtccactatgattgacggtggagagtctacgtta
gttcaacacaaagacaactatgtcactgctcaaagtcttcgaagtcaaatggaaagcttg
agaattggtggagaaattcctaaatcggcatatagctcgtcgaaaaatggcaactcaccg
cgcgttcaaccaccgggtcacaccgcaagcgcttcagacccttcaaaaaaccaaccgttt
gctcaagatggaaccggtccaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAACGTTGCTAAGCGAGGGAA 565 411 15 Antisense
GGGAATGTCCACTATGATTGACGGT 68 495 35 Antisense
GATTGACGGTGGAGAGTCTACGTTA 553 427 50 Antisense
GAGAGTCTACGTTAGTTCAACACAA 613 395 61 Antisense
GACAACTATGTCACTGCTCAAAGTC 10 367 87 Antisense
GTCACTGCTCAAAGTCTTCGAAGTC 215 465 96 Antisense
GGAAAGCTTGAGAATTGGTGGAGAA 469 527 125 Antisense
GGAGAAATTCCTAAATCGGCATATA 505 517 144 Antisense
GTCGAAAAATGGCAACTCACCGCGC 264 475 173 Antisense
AAAACCAACCGTTTGCTCAAGATGG 249 115 241 Antisense
GCTCAAGATGGAACCGGTCCAAACT 396 301 255 Antisense
Sequence Source Affymetrix Proprietary Database