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[174136_s_at]

Description CEK013E5F /REP_DB=TREMBL Accession /GB=D34874 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk13e5 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 12      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 127.8
(0.4)
P 		87.9
(-1.6)
P 		59.9
(-3)
A 		178.7
(3)
P 		119
B 107
(-1.2)
P 		87.6
(-1.8)
A 		45.4
(-3)
A 		255.3
(3)
P 		210
C 148
(-0.6)
P 		89.6
(-2.1)
M 		55.9
(-3)
M 		283.2
(3)
P 		227
avr 127.6
(-0.6) 		88.4
(-1.9) 		53.7
(-3) 		239.1
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 109.4
(1.1)
P 		54.1
(-2.4)
P 		63.2
(-1.8)
P 		43.6
(-3)
A 		140.8
(3)
P 		125.8
(2.1)
P 		97
B 72.2
(-2.2)
P 		69.7
(-2.3)
A 		47.1
(-3)
A 		133.9
(-0.1)
P 		87.8
(-1.7)
P 		229.8
(3)
P 		183
C 42.1
(-3)
P 		72.7
(-1.6)
P 		51.7
(-2.6)
A 		83.4
(-1.1)
P 		103.2
(-0.2)
P 		172
(3)
P 		130
avr 74.6
(-2) 		65.5
(-2.4) 		54
(-3) 		87
(-1.4) 		110.6
(-0.2) 		175.9
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 46.5
(3)
P 		19.1
(-2.3)
P 		15.7
(-3)
A 		26.2
(-1)
P 		31
B 34.1
(0.2)
P 		21.6
(-1.5)
A 		10.5
(-3)
A 		54.4
(3)
P 		44
C 49
(3)
P 		25.8
(-1.7)
M 		19.5
(-3)
M 		47.7
(2.7)
P 		30
avr 43.2
(3) 		22.2
(-1.5) 		15.2
(-3) 		42.8
(2.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 20.2
(-1.3)
P 		19.2
(-1.5)
P 		13.8
(-2.5)
P 		11.1
(-3)
A 		42.5
(3)
P 		30.6
(0.7)
P 		31
B 25.1
(-1.9)
P 		23.2
(-2)
A 		11.4
(-3)
A 		35.5
(-1.1)
P 		35.7
(-1)
P 		85.7
(3)
P 		74
C 15.6
(-2.7)
P 		22.2
(-1.8)
P 		13.2
(-3)
A 		16.8
(-2.5)
P 		33.4
(-0.3)
P 		57.6
(3)
P 		44
avr 20.3
(-2) 		21.5
(-1.8) 		12.8
(-3) 		21.1
(-1.9) 		37.2
(0.2) 		58
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174136_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21186
Sequence Type Exemplar sequence
Representative Public ID CEK013E5F NCBI
Target Description CEK013E5F /REP_DB=TREMBL Accession /GB=D34874 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk13e5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065699 NCBI Caenorhabditis elegans K10D2.2 (K10D2.2) mRNA, complete cds. 11/11 None
K10D2.2.2 ENSEMBL cdna:known chromosome:CEL140:III:5185875:5188582:1 gene:K10D2.2 11/11 None
K10D2.2.1 ENSEMBL cdna:known chromosome:CEL140:III:5185877:5188582:1 gene:K10D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5187906-5188232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D2.2
Entrez Gene 175708 Entrez gene
SwissProt Q09408 EMBL-EBI
WormBase CE27429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62540 Hypothetical protein K10D2.2 [Caenorhabditis elegans] ref|NP_498100.1| K10D2.2 [Caenorhabditis elegans] 0.0
blast CAE60032 Hypothetical protein CBG03540 [Caenorhabditis briggsae] 0.0
blast AAG37940 Hypothetical protein Y34F4.3 [Caenorhabditis elegans] ref|NP_497314.1| Y34F4.3 [Caenorhabditis elegans] 6.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 1.5E-19
Sequence
Target Sequence 
>C. ELEGANS:174136_S_AT
tacaaaccgatcacaaaatttattaattacccctttattaaccttttttatcacaagtcc
tagtgattcctagtgcatccattgcccattttaattgtatatgtacataattgaacccca
tccccacccgacatcacaacctcatcaatttttctcaaaacttttcaaaaatcgcgcctt
ttcttcccatttttgtgggtcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAACCGATCACAAAATTTATTA 458 641 71 Antisense
TAACCTTTTTTATCACAAGTCCTAG 83 637 109 Antisense
AAGTCCTAGTGATTCCTAGTGCATC 50 159 125 Antisense
TAGTGATTCCTAGTGCATCCATTGC 166 655 131 Antisense
CTAGTGCATCCATTGCCCATTTTAA 118 225 140 Antisense
GCATCCATTGCCCATTTTAATTGTA 680 309 145 Antisense
ATGTACATAATTGAACCCCATCCCC 401 47 171 Antisense
GACATCACAACCTCATCAATTTTTC 392 369 200 Antisense
CACAACCTCATCAATTTTTCTCAAA 154 195 205 Antisense
ACCTCATCAATTTTTCTCAAAACTT 76 89 209 Antisense
TTTCTTCCCATTTTTGTGGGTCTTG 73 671 250 Antisense
Sequence Source Affymetrix Proprietary Database