[Home] | [Total List]

[174135_at]

Description CEK066H6R /REP_DB=TREMBL Accession /GB=D65731 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk66h6 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 0      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 80.8
(-1.7)
A 		42.6
(-3)
A 		103.2
(-0.9)
P 		213.4
(3)
P 		171
B 74.3
(-1.4)
A 		37.8
(-3)
A 		71.6
(-1.5)
M 		172.5
(3)
P 		135
C 36
(-3)
A 		85
(-0.9)
P 		86.9
(-0.8)
P 		176.3
(3)
P 		140
avr 63.7
(-2.6) 		55.1
(-3) 		87.2
(-1.5) 		187.4
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 601
1 2 3 4 5 6 range
A 115.4
(-2.2)
A 		54.7
(-3)
A 		105
(-2.3)
P 		165.6
(-1.5)
P 		402.3
(1.7)
P 		494
(3)
P 		439
B 46.3
(-3)
A 		93.1
(-2.5)
P 		119.7
(-2.3)
P 		151.4
(-2)
P 		368.7
(0.2)
P 		647.2
(3)
P 		601
C 52.4
(-3)
A 		115.9
(-2.3)
P 		124.1
(-2.2)
A 		282.1
(-0.6)
P 		394
(0.6)
P 		615
(3)
P 		563
avr 71.4
(-3) 		87.9
(-2.8) 		116.3
(-2.5) 		199.7
(-1.5) 		388.3
(0.7) 		585.4
(3) 		514
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 29.4
(2.5)
A 		9.3
(-3)
A 		27
(1.8)
P 		31.2
(3)
P 		22
B 23.7
(0.1)
A 		9.3
(-3)
A 		16.6
(-1.4)
M 		36.8
(3)
P 		28
C 11.9
(-3)
A 		24.5
(1.1)
P 		30.3
(3)
P 		29.7
(2.8)
P 		18
avr 21.7
(-0.6) 		14.4
(-3) 		24.6
(0.4) 		32.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 21.3
(-2.9)
A 		19.5
(-3)
A 		22.9
(-2.8)
P 		42
(-1.7)
P 		121.4
(3)
P 		120.3
(2.9)
P 		102
B 16.1
(-3)
A 		31
(-2.6)
P 		29.1
(-2.7)
P 		40.1
(-2.4)
P 		149.8
(0.6)
P 		241.3
(3)
P 		225
C 19.4
(-3)
A 		35.4
(-2.5)
P 		31.6
(-2.6)
A 		56.7
(-1.8)
P 		127.5
(0.5)
P 		205.9
(3)
P 		187
avr 18.9
(-3) 		28.6
(-2.7) 		27.9
(-2.7) 		46.3
(-2) 		132.9
(1) 		189.2
(3) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21554
Sequence Type Exemplar sequence
Representative Public ID CEK066H6R NCBI
Target Description CEK066H6R /REP_DB=TREMBL Accession /GB=D65731 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk66h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068580(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068580 NCBI Caenorhabditis elegans Him-Three Paralog family member (htp-2) (htp-2) mRNA, complete cds. 11/11 None
Y73B6BL.2 ENSEMBL cdna:known chromosome:CEL140:IV:6419513:6420814:1 gene:Y73B6BL.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032058 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032097 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6420399-6420810(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol htp-2
Ensembl Y73B6BL.2
Entrez Gene 177405 Entrez gene
SwissProt Q95XC8 EMBL-EBI
WormBase CE37734 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63423 Him-three paralog protein 2 [Caenorhabditis elegans] ref|NP_500981.3| Him-Three Paralog family member (htp-2) [Caenorhabditis elegans] 0.0
blast AAK29805 Him-three paralog protein 1 [Caenorhabditis elegans] ref|NP_500799.2| Him-Three Paralog family member (htp-1) [Caenorhabditis elegans] 1.0E-164
blast B88691 protein F41H10.10 [imported] - Caenorhabditis elegans 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR003511 EMBL-EBI DNA-binding HORMA 7.2E-58
Sequence
Target Sequence 
>C. ELEGANS:174135_AT
gatatgtatgcattcaatccagtgaatgtgctgtataaatcgttcaattcggaggacacc
gacccaggtcttagtcaggatactactgaatctgccaacgatcaaggaggaaacgtgacg
tctccggttgataatataaccgattctctcgagaaaacacaaatgtcgcctatcaagatg
agaccaactactcgcagaggagccgatgacagcaaaaccagatcttctccatactctcgc
tcccgtaaataatttttctcgttgtgttcattagtttacagctttatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGTATGCATTCAATCCAGTGA 494 425 30 Antisense
GTTCAATTCGGAGGACACCGACCCA 539 445 71 Antisense
GACACCGACCCAGGTCTTAGTCAGG 25 369 84 Antisense
GGATACTACTGAATCTGCCAACGAT 579 509 107 Antisense
GAAACGTGACGTCTCCGGTTGATAA 623 357 139 Antisense
TTGATAATATAACCGATTCTCTCGA 667 703 157 Antisense
GTCGCCTATCAAGATGAGACCAACT 232 475 194 Antisense
TGACAGCAAAACCAGATCTTCTCCA 468 571 236 Antisense
ATACTCTCGCTCCCGTAAATAATTT 118 21 260 Antisense
AAATAATTTTTCTCGTTGTGTTCAT 340 117 276 Antisense
GTTCATTAGTTTACAGCTTTATCCT 228 445 295 Antisense
Sequence Source Affymetrix Proprietary Database