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[174134_at]

Description C53328_rc /REP_DB=TREMBL Accession /GB=C53328 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk297b5 : 3prime end, single read.
Cluster 6grp_total > 40      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 44.8
(-0.5)
A 		7.2
(-3)
A 		46.1
(-0.4)
A 		96.1
(3)
A 		89
B 57.1
(3)
A 		22.5
(-0.9)
A 		4.3
(-3)
A 		49.4
(2.1)
A 		53
C 36.9
(-0.4)
A 		7
(-3)
A 		41.3
(0)
A 		75
(3)
A 		68
avr 46.3
(0.3) 		12.2
(-3) 		30.6
(-1.2) 		73.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 25.2
(0.2)
A 		11.8
(-2)
A 		7.6
(-2.6)
A 		43.1
(3)
A 		5.2
(-3)
A 		24.5
(0.1)
A 		38
B 24
(-0.8)
A 		50.6
(3)
A 		40.2
(1.5)
A 		19.2
(-1.5)
A 		8.9
(-3)
A 		20.2
(-1.4)
A 		42
C 5.6
(-3)
A 		40.8
(3)
A 		11.8
(-1.9)
A 		38.2
(2.6)
A 		10.7
(-2.1)
A 		21.7
(-0.3)
A 		35
avr 18.3
(-0.7) 		34.4
(3) 		19.9
(-0.3) 		33.5
(2.8) 		8.3
(-3) 		22.1
(0.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.3
(3)
A 		1.6
(-3)
A 		12.1
(1.3)
A 		14.1
(2.1)
A 		15
B 18.2
(3)
A 		5.6
(-1.4)
A 		1
(-3)
A 		10.5
(0.3)
A 		17
C 12.2
(1.9)
A 		2
(-3)
A 		14.4
(3)
A 		12.6
(2.1)
A 		12
avr 15.6
(3) 		3.1
(-3) 		9.2
(-0.1) 		12.4
(1.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.6
(-1.1)
A 		4.2
(-1.3)
A 		1.7
(-2.9)
A 		10.9
(3)
A 		1.6
(-3)
A 		6
(-0.2)
A 		9
B 8.4
(-0.8)
A 		16.8
(3)
A 		9.8
(-0.2)
A 		5.1
(-2.3)
A 		3.6
(-3)
A 		7.5
(-1.2)
A 		13
C 2.1
(-3)
A 		12.4
(3)
A 		3
(-2.5)
A 		7.7
(0.3)
A 		3.5
(-2.2)
A 		7.3
(0)
A 		10
avr 5
(-1.5) 		11.1
(3) 		4.8
(-1.6) 		7.9
(0.7) 		2.9
(-3) 		6.9
(-0.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20277
Sequence Type Exemplar sequence
Representative Public ID C53328 NCBI
Target Description C53328_rc /REP_DB=TREMBL Accession /GB=C53328 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk297b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C53328
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C53328 C53328_rc /REP_DB=TREMBL Accession /GB=C53328 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk297b5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5422658-5422938(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174134_AT
agcagtctgactgatttgtgttagagcctgtgttgctccttcggcaagtgcagaagctcc
tccaacaaggttcgctgcctgttctgtgactgctgggacgacggttgtggacatgaaggt
gtagagtccattgacgatggagttcattgtttagttgtagttttctgaaaaaaaataata
tatacaaagagacaagttagaccggcaacggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTCTGACTGATTTGTGTTAGA 619 77 16 Antisense
GACTGATTTGTGTTAGAGCCTGTGT 670 375 24 Antisense
TGTTAGAGCCTGTGTTGCTCCTTCG 574 561 34 Antisense
TGTTGCTCCTTCGGCAAGTGCAGAA 456 563 46 Antisense
CTTCGGCAAGTGCAGAAGCTCCTCC 486 217 54 Antisense
GACTGCTGGGACGACGGTTGTGGAC 257 375 103 Antisense
GGACGACGGTTGTGGACATGAAGGT 649 517 111 Antisense
GAAGGTGTAGAGTCCATTGACGATG 471 331 130 Antisense
TTGACGATGGAGTTCATTGTTTAGT 400 687 146 Antisense
CATTGTTTAGTTGTAGTTTTCTGAA 114 215 160 Antisense
GAGACAAGTTAGACCGGCAACGGAA 421 393 204 Antisense
Sequence Source Affymetrix Proprietary Database